Evidence map›Paper›PMID 30866923›Full record

ArticleBMC veterinary research2019

Identification and genomic analysis of two novel duck-origin GPV-related parvovirus in China.

Guozhi Bian, Haibin Ma, Mengping Luo, Fengping Gong, Bo Li, Guiping Wang, Mudassar Mohiuddin, Ming Liao, Jianfeng Yuan

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Guozhi BianVeterinary Medicine College of South China Agricultural University, Guangzhou, 510642, China.
Haibin MaGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China.
Mengping LuoGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China.
Fengping GongGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China.
Bo LiGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China.
Guiping WangGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China.
Mudassar MohiuddinGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China.
Ming LiaoVeterinary Medicine College of South China Agricultural University, Guangzhou, 510642, China.
Jianfeng YuanGuangdong Haid Institute of Animal Husbandry & Veterinary, Guangzhou, 511400, China. peteryuanfeng@163.com.ORCID http://orcid.org/0000-0002-1190-1467
Animal Science Research Institute · CNSouth China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSince early 2015, mule duck and Cherry Valley duck flocks have been suffering from short beak and dwarfism syndrome. This widely spreading infectious disease is characterized by growth retardation, smaller beak and tarsus with high morbidity and low mortality rate. For better understanding, we identified and characterized virus isolates named AH and GD from diseased Cherry Valley duck and mule duck flocks and investigated the damage caused by novel parvovirus-related virus (NGPV) to tissues and organs, including kidney, brain, pancreas, liver, spleen, bursa of fabricius and myocardial tissues.

resultsAH and GD isolates shared high nucleotide identity with goose parvovirus (GPV). Alignment studies of AH and GD isolates showed 94.5-99.2% identity with novel parvovirus-related virus (NGPV), 98.7-91.5% identity with GPV and 79.9-83.7% with muscovy duck parvovirus (MDPV). Compared with other NGPV, classical GPV and MDPV sequences, a four 14-nucleotide-pair insertion in GD isolate was found in left open reading frame (ORF) (87-100 nt and 350-363 nt) and in right ORF (4847-4861 nt and 5122-5135 nt). However, in AH isolate, a five 14-nucleotide-pair deletions similar to other NGPV were found. The complete genome sequence comparison of eleven NGPV isolates from mule ducks and cherry valley ducks revealed no remarkable difference between them. Notably, the myocardium and bursa of fabricius of both disease and healthy animals are perfectly normal while other tissues have inflammatory cells exudation.

conclusionsThe AH and GD strains are novel parvovirus-related virus that isolates from mule ducks or cherry valley ducks which DNA sequence has no remarkable difference. The histopathology of tissues and organs such as kidney, brain etc. revealed non-significant changes in experimental and control animals. Overall, this study has contributed better understanding of molecular biology of NGPV strains and will help to develop the candidate strain for vaccine preparation to get better protection against these viral infections.

Indexed as

DucksGenome, ViralAnimalsChinaParvoviridae InfectionsParvovirinaePhylogenyPoultry DiseasesSequence Analysis, DNACherry valley duckMule duckNovel parvovirus-related virusPhylogenetic analysis

Identifiers

PMID30866923
PMCPMC6417286
OpenAlexW2947917201

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.