Evidence map›Paper›PMID 30866766›Full record

ArticleEmerging microbes & infections2019

Genotypic diversity and clinical outcome of cryptococcosis in renal transplant recipients in Brazil.

Vinicius Ponzio, Yuan Chen, Anderson Messias Rodrigues, Jennifer L Tenor, Dena L Toffaletti, José Osmar Medina-Pestana, Arnaldo Lopes Colombo, John R Perfect

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 2 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 2 syntheses or guidelines pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  6. The hypervirulent Type-1/Type-17 phenotype ofInfection and immunity · 2025
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  9. Genotyping Analysis ofJournal of fungi (Basel, Switzerland) · 2023
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  11. Cryptococcus spp. and Cryptococcosis: focusing on the infection in Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Review
  12. Journal of fungi (Basel, Switzerland) · 2021
    Article
  13. Article
  14. Journal of fungi (Basel, Switzerland) · 2021
    Review
  15. Associations betweenJournal of fungi (Basel, Switzerland) · 2021
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  16. A New Duplex PCR-Assay for the Detection and Identification ofJournal of fungi (Basel, Switzerland) · 2021
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  17. Case Report: Malacoplakia Due toFrontiers in medicine · 2021
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  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Vinicius Ponzioa Department of Medicine, Division of Infectious Diseases, Escola Paulista de Medicina , Universidade Federal de São Paulo (UNIFESP) , São Paulo , Brazil.ORCID http://orcid.org/0000-0003-2991-3084
Yuan Chenb Division of Infectious Disease, Department of Medicine , Duke University School of Medicine , Durham , NC , USA.
Anderson Messias Rodriguesc Laboratory of Emerging Fungal Pathogens, Department of Microbiology, Immunology and Parasitology , Universidade Federal de São Paulo (UNIFESP) , São Paulo , Brazil.ORCID http://orcid.org/0000-0003-0891-4563
Jennifer L Tenorb Division of Infectious Disease, Department of Medicine , Duke University School of Medicine , Durham , NC , USA.
Dena L Toffalettib Division of Infectious Disease, Department of Medicine , Duke University School of Medicine , Durham , NC , USA.
José Osmar Medina-Pestanad Hospital do Rim Oswaldo Ramos Foundation, Discipline of Nephrology , Universidade Federal de São Paulo (UNIFESP) , São Paulo , Brazil.
Arnaldo Lopes Colomboa Department of Medicine, Division of Infectious Diseases, Escola Paulista de Medicina , Universidade Federal de São Paulo (UNIFESP) , São Paulo , Brazil.ORCID http://orcid.org/0000-0003-0793-8491
John R Perfectb Division of Infectious Disease, Department of Medicine , Duke University School of Medicine , Durham , NC , USA.
Duke University · USUniversidade Federal de São Paulo · BRHospital do Rim e Hipertensão · BR

Funding

Pathobiology of C. neoformans in the Central Nervous SystemR01AI073896 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2008 to 2018
$4.4M
Evolution of Cryptococcus neoformans Strains from Patients with HIV/AIDSR01AI093257 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2011 to 2022
$3.8M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NIAID NIH HHS R01 AI073896NIAID NIH HHS R01 AI093257NIH HHS S10 OD018164
6 · The paper itself

Abstract

Genotypic diversity and fluconazole susceptibility of 82 Cryptococcus neoformans and Cryptococcus gattii isolates from 60 renal transplant recipients in Brazil were characterized. Clinical characteristics of the patients and prognostic factors were analysed. Seventy-two (87.8%) isolates were C. neoformans and 10 (12.2%) were C. gattii. VNI was the most common molecular type (40 cases; 66.7%), followed by VNII (9 cases; 15%), VGII (6 cases; 10%), VNB (4 cases; 6.7%) and VNI/II (1 case; 1.7%). The isolates showed a high genetic diversity in the haplotype network and six new sequence types were described, most of them for VNB. There was a bias towards skin involvement in the non-VNI population (P = .012). VGII isolates exhibited higher fluconazole minimum inhibitory concentrations compared to C. neoformans isolates (P = 0.008). The 30-day mortality rate was 38.3%, and it was significantly associated with fungemia and absence of headache. Patients infected with VGII had a high mortality rate at 90 days (66.7%). A variety of molecular types produce disease in renal transplant recipients in Brazil and highlighted by VGII and VNB. We report the clinical appearance and impact of the molecular type, fluconazole susceptibility of the isolates, and clinical characteristics on patient outcome in this population.

Indexed as

Genetic VariationAdultAgedBrazilCryptococcosisCryptococcus gattiiCryptococcus neoformansFemaleFluconazoleHaplotypesHumansKidney TransplantationMaleMicrobial Sensitivity TestsMiddle AgedPrognosisFluconazolegenotypic diversitymolecular typerenal transplantation

Identifiers

PMID30866766
PMCPMC6455115
OpenAlexW2912133502

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.