Evidence map›Paper›PMID 30865659›Full record

ArticlePloS one2019

Comparative transcriptome analyses revealed differential strategies of roots and leaves from methyl jasmonate treatment Baphicacanthus cusia (Nees) Bremek and differentially expressed genes involved in tryptophan biosynthesis.

Wenjin Lin, Wei Huang, Shuju Ning, Xiaogui Gong, Qi Ye, Daozhi Wei

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
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  5. Expression and Functional Study ofFrontiers in plant science · 2022
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  6. Optimization of Extraction of Bioactive Compounds fromMolecules (Basel, Switzerland) · 2021
    Article
  7. High-Quality Genome of the Medicinal PlantFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Wenjin LinSchool of Life science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Wei HuangSchool of Life science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Shuju NingSchool of Crop science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Xiaogui GongSchool of Life science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Qi YeSchool of Life science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Daozhi WeiSchool of Life science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.ORCID 0000-0002-3776-3023
Fujian Agriculture and Forestry University · CNFujian Academy of Medical Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Baphicacanthus cusia (Nees) Bremek (B. cusia) is an effective herb for the treatment of acute promyelocytic leukemia and psoriasis in traditional Chinese medicine. Methyl jasmonate (MeJA) is a well-known signaling phytohormone that triggers gene expression in secondary metabolism. Currently, MeJA-mediated biosynthesis of indigo and indirubin in B. cusia is not well understood. In this study, we analyzed the content of indigo and indirubin in leaf and root tissues of B. cusia with high-performance liquid chromatography and measured photosynthetic characteristics of leaves treated by MeJA using FluorCam6 Fluorometer and chlorophyll fluorescence using the portable photosynthesis system CIRAS-2. We performed de novo RNA-seq of B. cusia leaf and root transcriptional profiles to investigate differentially expressed genes (DEGs) in response to exogenous MeJA application. The amount of indigo in MeJA-treated leaves were higher than that in controled leaves (p = 0.004), and the amounts of indigo in treated roots was higher than that in controlled roots (p = 0.048); Chlorophyll fluorescence of leaves treated with MeJA were significantly decreased. Leaves treated with MeJA showed lower photosynthetic rate compared to the control in the absence of MeJA. Functional annotation of DEGs showed the DEGs related to growth and development processes were down-regulated in the treated leaves, while most of the unigenes involved in the defense response were up-regulated in treated roots. This coincided with the effects of MeJA on photosynthetic characteristics and chlorophyll fluorescence. The qRT-PCR results showed that MeJA appears to down-regulate the gene expression of tryptophan synthase β-subunits (trpA-β) in leaves but increased the gene expression of anthranilate synthase (trp 3) in roots responsible for increased indigo content. The results showed that MeJA suppressed leaf photosynthesis for B. cusia and this growth-defense trade-off may contribute to the improved adaptability of B. cusia in changing environments.

Indexed as

AcanthaceaeAcetatesAdaptation, PhysiologicalBiosynthetic PathwaysChinaCyclopentanesGene Expression ProfilingGene Expression Regulation, PlantIndigo CarmineIndolesOxylipinsPhotosynthesisPlant BreedingPlant Growth RegulatorsPlant LeavesPlant RootsAcetatesCyclopentanesIndigo CarmineindirubinIndolesmethyl jasmonateOxylipinsPlant Growth RegulatorsTryptophan

Identifiers

PMID30865659
PMCPMC6415880
OpenAlexW2922067080

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.