Evidence map›Paper›PMID 30865231›Full record

ArticleMolecular biology and evolution2019

The Genome of Drosophila innubila Reveals Lineage-Specific Patterns of Selection in Immune Genes.

Tom Hill, Boryana S Koseva, Robert L Unckless

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Molecular biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tom HillDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS.
Boryana S KosevaK-INBRE Bioinformatics Core, University of Kansas, Lawrence, KS.
Robert L UncklessDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS.
University of Kansas · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Understanding the mechanobiology of stem cells in a microengineered 3D cardiac tissue environment with cardiomyopathyP20GM103638 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI LUNTE, SUSAN M · 2012 to 2021
$22.1M
The causes of balancing selection on immunity genes: from populations to molecular interactions.R01AI139154 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI UNCKLESS, ROBERT L · 2018 to 2022
$1.9M
Antimicrobial peptides as models for the evolution of gene duplicationR00GM114714 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI UNCKLESS, ROBERT L · 2016 to 2018
$732k
NIAID NIH HHS R01 AI139154NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20 GM103638NIGMS NIH HHS R00 GM114714
6 · The paper itself

Abstract

Pathogenic microbes can exert extraordinary evolutionary pressure on their hosts. They can spread rapidly and sicken or even kill their host to promote their own proliferation. Because of this strong selective pressure, immune genes are some of the fastest evolving genes across metazoans, as highlighted in mammals and insects. Drosophila melanogaster serves as a powerful model for studying host/pathogen evolution. While Drosophila melanogaster are frequently exposed to various pathogens, little is known about D. melanogaster's ecology, or if they are representative of other Drosophila species in terms of pathogen pressure. Here, we characterize the genome of Drosophila innubila, a mushroom-feeding species highly diverged from D. melanogaster and investigate the evolution of the immune system. We find substantial differences in the rates of evolution of immune pathways between D. innubila and D. melanogaster. Contrasting what was previously found for D. melanogaster, we find little evidence of rapid evolution of the antiviral RNAi genes and high rates of evolution in the Toll pathway. This suggests that, while immune genes tend to be rapidly evolving in most species, the specific genes that are fastest evolving may depend either on the pathogens faced by the host and/or divergence in the basic architecture of the host's immune system.

Indexed as

Biological EvolutionGenome, InsectSelection, GeneticAnimalsDrosophilaFemaleMaleRNA InterferenceantiviralDrosophilaTollviral immunity

Identifiers

PMID30865231
PMCPMC6573480
OpenAlexW2922174011

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.