Evidence map›Paper›PMID 30864799›Full record

ArticleThe journal of physical chemistry letters2019

Gd(III)-Gd(III) Relaxation-Induced Dipolar Modulation Enhancement for In-Cell Electron Paramagnetic Resonance Distance Determination.

Mykhailo Azarkh, Anna Bieber, Mian Qi, Jörg W A Fischer, Maxim Yulikov, Adelheid Godt, Malte Drescher

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Hexanuclear LnChemistry (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  6. Article
  7. Pulse dipolar EPR for determining nanomolar binding affinities.Chemical communications (Cambridge, England) · 2022
    Article
  8. Nanomolar Pulse Dipolar EPR Spectroscopy in Proteins: CuThe journal of physical chemistry. B · 2021
    Article
  9. Article
  10. Compaction of RNA Duplexes in the Cell*.Angewandte Chemie (International ed. in English) · 2020
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mykhailo AzarkhDepartment of Chemistry , University of Konstanz , Universitätsstraße 10 , 78457 Konstanz , Germany.ORCID http://orcid.org/0000-0003-2013-5685
Anna BieberDepartment of Chemistry , University of Konstanz , Universitätsstraße 10 , 78457 Konstanz , Germany.
Mian QiFaculty of Chemistry and Center for Molecular Materials (CM2) , Bielefeld University , Universitätsstraße 25 , 33615 Bielefeld , Germany.
Jörg W A FischerDepartment of Chemistry , University of Konstanz , Universitätsstraße 10 , 78457 Konstanz , Germany.
Maxim YulikovLaboratory of Physical Chemistry, Department of Chemistry and Applied Biosciences , ETH Zurich , Vladimir-Prelog-Weg 2 , 8093 Zurich , Switzerland.ORCID http://orcid.org/0000-0003-3275-0714
Adelheid GodtFaculty of Chemistry and Center for Molecular Materials (CM2) , Bielefeld University , Universitätsstraße 25 , 33615 Bielefeld , Germany.ORCID http://orcid.org/0000-0001-8453-1439
Malte DrescherDepartment of Chemistry , University of Konstanz , Universitätsstraße 10 , 78457 Konstanz , Germany.ORCID http://orcid.org/0000-0002-3571-3452

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In-cell distance determination by electron paramagnetic resonance (EPR) spectroscopy reveals essential structural information about biomacromolecules under native conditions. We demonstrate that the pulsed EPR technique RIDME (relaxation induced dipolar modulation enhancement) can be utilized for such distance determination. The performance of in-cell RIDME has been assessed at Q-band using stiff molecular rulers labeled with Gd(III)-PyMTA and microinjected into Xenopus laevis oocytes. The overtone coefficients are determined to be the same for protonated aqueous solutions and inside cells. As compared to in-cell DEER (double electron-electron resonance, also abbreviated as PELDOR), in-cell RIDME features approximately 5 times larger modulation depth and does not show artificial broadening in the distance distributions due to the effect of pseudosecular terms.

Identifiers

PMID30864799
PMCPMC6625747

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.