Evidence map›Paper›PMID 30864660›Full record

ArticleNucleic acids research2019

IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties.

Robert Dagil, Neil J Ball, Roksana W Ogrodowicz, Fruzsina Hobor, Andrew G Purkiss, Geoff Kelly, Stephen R Martin, Ian A Taylor, Andres Ramos

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  7. IGF2BPs as novel mGenes & diseases · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Robert DagilResearch Department of Structural and Molecular Biology, University College London, Darwin Building, Gower Street, London WC1E 6XA, UK.
Neil J BallMacromolecular Structure Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Roksana W OgrodowiczStructural Biology Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Fruzsina HoborResearch Department of Structural and Molecular Biology, University College London, Darwin Building, Gower Street, London WC1E 6XA, UK.
Andrew G PurkissStructural Biology Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Geoff KellyMRC Biomedical NMR Centre, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Stephen R MartinStructural Biology Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Ian A TaylorMacromolecular Structure Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Andres RamosResearch Department of Structural and Molecular Biology, University College London, Darwin Building, Gower Street, London WC1E 6XA, UK.
The Francis Crick Institute · GBInstitute of Structural and Molecular Biology · GB

Funding

Medical Research Council FC001029Medical Research Council MC_PC_13051Medical Research Council MC_U117574558Medical Research Council U117574558Wellcome Trust FC001029Wellcome Trust FC001178
6 · The paper itself

Abstract

IGF2 mRNA-binding protein 1 (IMP1) is a key regulator of messenger RNA (mRNA) metabolism and transport in organismal development and, in cancer, its mis-regulation is an important component of tumour metastasis. IMP1 function relies on the recognition of a diverse set of mRNA targets that is mediated by the combinatorial action of multiple RNA-binding domains. Here, we dissect the structure and RNA-binding properties of two key RNA-binding domains of IMP1, KH1 and KH2, and we build a kinetic model for the recognition of RNA targets. Our data and model explain how the two domains are organized as an intermolecular pseudo-dimer and that the important role they play in mRNA target recognition is underpinned by the high RNA-binding affinity and fast kinetics of this KH1KH2-RNA recognition unit. Importantly, the high-affinity RNA-binding by KH1KH2 is achieved by an inter-domain coupling 50-fold stronger than that existing in a second pseudo-dimer in the protein, KH3KH4. The presence of this strong coupling supports a role of RNA re-modelling in IMP1 recognition of known cancer targets.

Indexed as

Amino Acid SequenceBinding SitesCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGenetic VectorsHumansKineticsModels, MolecularProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsProto-Oncogene Proteins c-mycRecombinant ProteinsIGF2BP1 protein, humanMYC protein, humanProto-Oncogene Proteins c-mycRecombinant ProteinsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID30864660
PMCPMC6486635
OpenAlexW2921738611

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.