ArticleNucleic acids research2019
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization.
Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 737 papers.
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Who cites it
737 citing papers in PubMed.
- Mitogenomic Insights Into the Ancient Split and Cryptic Diversity of theEcology and evolution · 2026Article
- MitoNumt: A Workflow for Recovering Mitochondrial Genomes From Long-Read Data and Detecting NUMT Contamination in Mitochondrial Genome Assemblies.Molecular ecology resources · 2026Article
- Mitogenome of Rhabdophis swinhonis (Squamata: Colubridae): Its Comparative Description and Phylogenetic Position Within Colubridae.Biochemical genetics · 2026Article
- The Complete Mitochondrial Genome of a Newly Recorded Chinese Species of Diglyphus sabulosus (Hymenoptera: Eulophidae) and Insights into Its Phylogenetic Position.Biochemical genetics · 2026Article
- From Southeast Asia to global: phylogeny, biogeography and character evolution of the thread-legged bug tribe Leistarchini (Hemiptera: Reduviidae: Emesinae).Cladistics : the international journal of the Willi Hennig Society · 2026Article
- Scalable assembly of Ascaris mitogenomes from whole-genome data reveals a novel clade.Scientific reports · 2026Article
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- Genomic characterization of LaoThe Journal of general virology · 2026Article
- Whole mitogenome profile of Pelung and Sentul chickens to reveal potency of Indonesian livestock genetic resources.Journal, genetic engineering & biotechnology · 2026Article
- De Novo Assembly and Comparative Analysis of the Complete Mitochondrial Genome ofEcology and evolution · 2026Article
- Reference-Guided Chromosome-Scale Genome Assembly With Insights on Population Genomics of the Atlantic Goliath Grouper (Ecology and evolution · 2026Article
- Genome Characterization of a Novel Bisegmented Positive-Sense RNA Virus Infecting the Bean Flower Thrips (Viruses · 2026Article
- Analyses of the mitochondrial genomes of three Eviphididae mites reveal the phylogenetic position of Eviphididae within Gamasina.Experimental & applied acarology · 2026Article
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- The Complex Interplay between Evolutionary Flexibility and Diversification in a Family of Spiders.Systematic biology · 2026Article
- The Complete Mitochondrial Genome ofBiology · 2026Article
- EZmito2: a tool suite for mitochondrial genome dataset preparation, population genetics, and visualization.Molecular biology and evolution · 2026Article
- Assessing differences among elasmobranch nurseries to aid conservation based on a genomics framework.Conservation biology : the journal of the Society for Conservation Biology · 2026Article
677 more citing papers are in PubMed but not listed here.
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Mitochondrial genome (mitogenome) plays important roles in evolutionary and ecological studies. It becomes routine to utilize multiple genes on mitogenome or the entire mitogenomes to investigate phylogeny and biodiversity of focal groups with the onset of High Throughput Sequencing (HTS) technologies. We developed a mitogenome toolkit MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw reads. We evaluated its performance using a total of 50 samples of which mitogenomes are publicly available. The results showed that MitoZ can recover more full-length mitogenomes with higher accuracy compared to the other available mitogenome assemblers. Overall, MitoZ provides a one-click solution to construct the annotated mitogenome from HTS raw data and will facilitate large scale ecological and evolutionary studies. MitoZ is free open source software distributed under GPLv3 license and available at https://github.com/linzhi2013/MitoZ.
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