Evidence map›Paper›PMID 30864352›Full record

ArticleJournal of integrative bioinformatics2018

GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks.

Alban Shoshi, Ralf Hofestädt, Olga Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A Ivanisenko, Victor E Dosenko, Elena Yu Bragina

Abstract read
In one paragraph

Article in Journal of integrative bioinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. An overview of graph databases and their applications in the biomedical domain.Database : the journal of biological databases and curation · 2021
    Article
  3. BioDWH2: an automated graph-based data warehouse and mapping tool.Journal of integrative bioinformatics · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alban ShoshiBielefeld University, Bioinformatics/Medical Informatics Department, Bielefeld, Germany.
Ralf HofestädtBielefeld University, Bioinformatics/Medical Informatics Department, Bielefeld, Germany.
Olga ZolotarevaBielefeld University, Bioinformatics/Medical Informatics Department, Bielefeld, Germany.ORCID https://orcid.org/0000-0002-9424-8052
Marcel FriedrichsBielefeld University, Bioinformatics/Medical Informatics Department, Bielefeld, Germany.ORCID https://orcid.org/0000-0001-9846-7212
Alex MaierBielefeld University, Bioinformatics/Medical Informatics Department, Bielefeld, Germany.
Vladimir A IvanisenkoInstitute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russia.
Victor E DosenkoBogomoletz Institute of Physiology, Kiev, Ukraine.
Elena Yu BraginaResearch Institute of Medical Genetics, Tomsk NRMC, Tomsk, Russia.ORCID https://orcid.org/0000-0002-1103-3073

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The prevalence of comorbid diseases poses a major health issue for millions of people worldwide and an enormous socio-economic burden for society. The molecular mechanisms for the development of comorbidities need to be investigated. For this purpose, a workflow system was developed to aggregate data on biomedical entities from heterogeneous data sources. The process of integrating and merging all data sources of the workflow system was implemented as a semi-automatic pipeline that provides the import, fusion, and analysis of the highly connected biomedical data in a Neo4j database GenCoNet. As a starting point, data on the common comorbid diseases essential hypertension and bronchial asthma was integrated. GenCoNet (https://genconet.kalis-amts.de) is a curated database that provides a better understanding of hereditary bases of comorbidities.

Indexed as

Computer GraphicsDatabases, FactualGene Regulatory NetworksSoftwareAsthmaComorbidityComputational BiologyEssential HypertensionHumansWorkflowAsthmaComorbidityDatabaseHypertensionPipelineWorkflow

Identifiers

PMID30864352
PMCPMC6348742

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.