Evidence map›Paper›PMID 30864310›Full record

ArticlePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing2019

Removing Confounding Factors Associated Weights in Deep Neural Networks Improves the Prediction Accuracy for Healthcare Applications.

Haohan Wang, Zhenglin Wu, Eric P Xing

Abstract read
In one paragraph

Article in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Metadata Normalization.Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2021
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Haohan WangSchool of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA, haohanw@cs.cmu.edu.
Zhenglin Wu
Eric P Xing

Funding

NIDA Center of Excellence OF Computational Drug Abuse Research (CDAR)P30DA035778 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET, XIE, XIANG-QUN · 2014 to 2018
$5.4M
Time/Space-Varying Networks of Molecular Interactions: A New Paradigm for StudyinR01GM093156 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI XING, ERIC P · 2010 to 2014
$2.2M
NIDA NIH HHS P30 DA035778NIGMS NIH HHS R01 GM093156
6 · The paper itself

Abstract

The proliferation of healthcare data has brought the opportunities of applying data-driven approaches, such as machine learning methods, to assist diagnosis. Recently, many deep learning methods have been shown with impressive successes in predicting disease status with raw input data. However, the "black-box" nature of deep learning and the highreliability requirement of biomedical applications have created new challenges regarding the existence of confounding factors. In this paper, with a brief argument that inappropriate handling of confounding factors will lead to models' sub-optimal performance in real-world applications, we present an efficient method that can remove the inuences of confounding factors such as age or gender to improve the across-cohort prediction accuracy of neural networks. One distinct advantage of our method is that it only requires minimal changes of the baseline model's architecture so that it can be plugged into most of the existing neural networks. We conduct experiments across CT-scan, MRA, and EEG brain wave with convolutional neural networks and LSTM to verify the efficiency of our method.

Indexed as

Deep LearningMedical InformaticsNeural Networks, ComputerComputational BiologyDiagnosis, Computer-AssistedHumansMachine LearningMedical Informatics ApplicationsMedical Informatics Computing

Identifiers

PMID30864310
PMCPMC6417810

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.