Evidence map›Paper›PMID 30863881›Full record

ArticleJournal of molecular evolution2019

Visualization of Genetic Drift Processes Using the Conserved Collagen 1α1 GXY Domain.

Anne J Kleinnijenhuis

Abstract read
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In one paragraph

Article in Journal of molecular evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Anne J KleinnijenhuisTriskelion, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands. anne.kleinnijenhuis@triskelion.nl.ORCID 0000-0003-4968-4004
Pension Fund for Care and Well-Being · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Speciation proceeds by the accumulation of DNA differences in time. The genetic code changes as a result of genetic drift and by selective pressure. In variable domains, exposure to high selective pressure obscures the view on background mutations. Therefore, we characterized and visualized background mutations using the highly conserved collagen 1α1 GXY domain. Typical change routes were identified and the data set showed several indications that changes in the collagen 1α1 GXY domain have taken place randomly within a functionally restricted space. The types of nucleotide and codon group differences are similar across the vertebrate subphylum and gradually become less functionally neutral with increasing distance between species, which offers the opportunity for rapid visualization of evolutionary relations using a single domain. It was concluded that the findings and approach of the study could be important for analytical method development in authenticity research, especially when conserved domains are targeted.

Indexed as

AnimalsBiological EvolutionCodonCollagenCollagen Type ICollagen Type I, alpha 1 ChainDatabases, GeneticEvolution, MolecularGenetic DriftHumansMutationProtein DomainsSequence Analysis, DNAVertebratesCodonCollagenCollagen Type ICollagen Type I, alpha 1 ChainAuthenticityCoding DNACollagen 1α1Functional restrictionGenetic driftMolecular evolution

Identifiers

PMID30863881
OpenAlexW2920909525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.