Evidence map›Paper›PMID 30862777›Full record

ArticleNature communications2019

Structural basis for assembly of vertical single β-barrel viruses.

Isaac Santos-Pérez, Diego Charro, David Gil-Carton, Mikel Azkargorta, Felix Elortza, Dennis H Bamford, Hanna M Oksanen, Nicola G A Abrescia

Abstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Glycoproteins in Viruses.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. The Expanding Diversity of Viruses from Extreme Environments.International journal of molecular sciences · 2024
    Review
  10. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
  11. Review
  12. ICTV Virus Taxonomy Profile:The Journal of general virology · 2023
    Article
  13. Article
  14. Article
  15. Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Viruses in astrobiology.Frontiers in microbiology · 2022
    Review
  17. Article
  18. Cellular and Genomic Properties ofFrontiers in microbiology · 2021
    Article
  19. The LUCA and its complex virome.Nature reviews. Microbiology · 2020
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Isaac Santos-PérezMolecular Recognition and Host-pathogen Interactions Programme, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160, Derio, Spain.
Diego CharroMolecular Recognition and Host-pathogen Interactions Programme, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160, Derio, Spain.
David Gil-CartonMolecular Recognition and Host-pathogen Interactions Programme, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160, Derio, Spain.
Mikel AzkargortaProteomics Platform, CIC bioGUNE, CIBERehd, ProteoRed-ISCIII, Bizkaia Technology Park, 48160, Derio, Spain.
Felix ElortzaProteomics Platform, CIC bioGUNE, CIBERehd, ProteoRed-ISCIII, Bizkaia Technology Park, 48160, Derio, Spain.
Dennis H BamfordMolecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, Viikki Biocenter, University of Helsinki, P.O. Box 56, Viikinkaari 9, 00014, Helsinki, Finland.ORCID http://orcid.org/0000-0002-6438-8118
Hanna M OksanenMolecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, Viikki Biocenter, University of Helsinki, P.O. Box 56, Viikinkaari 9, 00014, Helsinki, Finland.ORCID http://orcid.org/0000-0003-3047-8294
Nicola G A AbresciaMolecular Recognition and Host-pathogen Interactions Programme, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160, Derio, Spain. nabrescia@cicbiogune.es.ORCID http://orcid.org/0000-0001-5559-1918

Funding

Wellcome Trust
6 · The paper itself

Abstract

The vertical double β-barrel major capsid protein (MCP) fold, fingerprint of the PRD1-adeno viral lineage, is widespread in many viruses infecting organisms across the three domains of life. The discovery of PRD1-like viruses with two MCPs challenged the known assembly principles. Here, we present the cryo-electron microscopy (cryo-EM) structures of the archaeal, halophilic, internal membrane-containing Haloarcula californiae icosahedral virus 1 (HCIV-1) and Haloarcula hispanica icosahedral virus 2 (HHIV-2) at 3.7 and 3.8 Å resolution, respectively. Our structures reveal proteins located beneath the morphologically distinct two- and three-tower capsomers and homopentameric membrane proteins at the vertices that orchestrate the positioning of pre-formed vertical single β-barrel MCP heterodimers. The cryo-EM based structures together with the proteomics data provide insights into the assembly mechanism of this type of viruses and into those with membrane-less double β-barrel MCPs.

Indexed as

Virus AssemblyArchaeal VirusesCapsid ProteinsCryoelectron MicroscopyDNA VirusesHaloarculaModels, MolecularProtein Conformation, beta-StrandProtein MultimerizationVirionCapsid Proteins

Identifiers

PMID30862777
PMCPMC6414509

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.