Evidence map›Paper›PMID 30861228›Full record

ArticleProtein science : a publication of the Protein Society2019

An ensemble of lipoxygenase structures reveals novel conformations of the Fe coordination sphere.

Svetlana Pakhomova, William E Boeglin, David B Neau, Sue G Bartlett, Alan R Brash, Marcia E Newcomer

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 12 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Svetlana PakhomovaDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana.
William E BoeglinDepartment of Pharmacology Vanderbilt, University School of Medicine, Nashville, Tennessee, 37232.
David B NeauNortheastern Collaborative Access Team, Argonne National Laboratory, Cornell University, Argonne, Illinois.
Sue G BartlettDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana.
Alan R BrashDepartment of Pharmacology Vanderbilt, University School of Medicine, Nashville, Tennessee, 37232.
Marcia E NewcomerDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana.
Louisiana State University · USVanderbilt University · USCornell University · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
The Structural Basis for Control of 5-Lipoxgenease ActivityR01HL107887 · NHLBI · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI NEWCOMER, MARCIA E. · 2011 to 2014
$1.4M
NCRR NIH HHS S10 RR029205NHLBI NIH HHS HL 107887NHLBI NIH HHS R01 HL107887NIGMS NIH HHS P30 GM124165NIH HHS S10 OD021527
6 · The paper itself

Abstract

The regio- and stereo-specific oxygenation of polyunsaturated fatty acids is catalyzed by lipoxygenases (LOX); both Fe and Mn forms of the enzyme have been described. Structural elements of the Fe and Mn coordination spheres and the helical catalytic domain in which the metal center resides are highly conserved. However, animal, plant, and microbial LOX each have distinct features. We report five crystal structures of a LOX from the fungal plant pathogen Fusarium graminearum. This LOX displays a novel amino terminal extension that provides a wrapping domain for dimerization. Moreover, this extension appears to interfere with the iron coordination sphere, as the typical LOX configuration is not observed at the catalytic metal when the enzyme is dimeric. Instead novel tetra-, penta-, and hexa-coordinate Fe

Indexed as

Binding SitesCatalytic DomainCrystallography, X-RayFungal ProteinsFusariumIronLipoxygenasesManganeseModels, MolecularProtein ConformationProtein MultimerizationSubstrate SpecificityFungal ProteinsIronLipoxygenasesManganeseenzymeslipid oxidationlipoxygenaseprotein structurex-ray crystallography

Identifiers

PMID30861228
PMCPMC6459989
OpenAlexW2925325276

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.