Evidence map›Paper›PMID 30860604›Full record

ArticlePhotochemistry and photobiology2019

Redshifted and Near-infrared Active Analog Pigments Based upon Archaerhodopsin-3.

Srividya Ganapathy, Svenja Kratz, Que Chen, Klaas J Hellingwerf, Huub J M de Groot, Kenneth J Rothschild, Willem J de Grip

Open access · hybridAbstract read
In one paragraph

Article in Photochemistry and photobiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Merocyanines form bacteriorhodopsins with strongly bathochromic absorption maxima.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Srividya GanapathyLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.ORCID 0000-0003-1264-9387
Svenja KratzLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Que ChenSwammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Klaas J HellingwerfSwammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Huub J M de GrootLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Kenneth J RothschildMolecular Biophysics Laboratory, Photonics Center and Department of Physics, Boston University, Boston, MA.
Willem J de GripLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Leiden University · NLUniversity of Amsterdam · NLBoston University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Archaerhodopsin-3 (AR3) is a member of the microbial rhodopsin family of hepta-helical transmembrane proteins, containing a covalently bound molecule of all-trans retinal as a chromophore. It displays an absorbance band in the visible region of the solar spectrum (λmax 556 nm) and functions as a light-driven proton pump in the archaeon Halorubrum sodomense. AR3 and its mutants are widely used in neuroscience as optogenetic neural silencers and in particular as fluorescent indicators of transmembrane potential. In this study, we investigated the effect of analogs of the native ligand all-trans retinal A1 on the spectral properties and proton-pumping activity of AR3 and its single mutant AR3 (F229S). While, surprisingly, the 3-methoxyretinal A2 analog did not redshift the absorbance maximum of AR3, the analogs retinal A2 and 3-methylamino-16-nor-1,2,3,4-didehydroretinal (MMAR) did generate active redshifted AR3 pigments. The MMAR analog pigments could even be activated by near-infrared light. Furthermore, the MMAR pigments showed strongly enhanced fluorescence with an emission band in the near-infrared peaking around 815 nm. We anticipate that the AR3 pigments generated in this study have widespread potential for near-infrared exploitation as fluorescent voltage-gated sensors in optogenetics and artificial leafs and as proton pumps in bioenergy-based applications.

Indexed as

Archaeal ProteinsHalorubrumModels, MolecularMutationPigments, BiologicalProtein BindingProtein ConformationProton PumpsArchaeal Proteinsarchaerhodopsin protein, ArchaeaPigments, BiologicalProton Pumps

Identifiers

PMID30860604
PMCPMC6849744
OpenAlexW2920947211

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.