Evidence map›Paper›PMID 30858574›Full record

ArticleNature microbiology2019

Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle.

Javier A Ceja-Navarro, Ulas Karaoz, Markus Bill, Zhao Hao, Richard A White, Abelardo Arellano, Leila Ramanculova, Timothy R Filley, Timothy D Berry, Mark E Conrad and 8 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Microbiology spectrum · 2026
    Article
  5. Bacterial diversity in gut compartments ofFrontiers in microbiology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Turning trash into treasure:Applied and environmental microbiology · 2024
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 1 country.

Javier A Ceja-NavarroEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-2954-3477
Ulas KaraozEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8238-6757
Markus BillEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Zhao HaoEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-0677-8529
Richard A WhiteBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Abelardo ArellanoEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Leila RamanculovaEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Timothy R FilleyDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, West Lafayette, IN, USA.
Timothy D BerryDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, West Lafayette, IN, USA.
Mark E ConradEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Meredith BlackwellDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA.ORCID http://orcid.org/0000-0003-2967-612X
Carrie D NicoraBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Young-Mo KimBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-8972-7593
Patrick N ReardonNMR Facility, Oregon State University, Corvallis, OR, USA.
Mary S LiptonEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Joshua N AdkinsUniversity of South Carolina, Columbia, SC, USA.ORCID http://orcid.org/0000-0003-0399-0700
Jennifer Pett-RidgePhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.
Eoin L BrodieEcology Department, Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. ELBrodie@lbl.gov.ORCID http://orcid.org/0000-0002-8453-8435
Lawrence Berkeley National Laboratory · USPacific Northwest National Laboratory · USLawrence Livermore National Laboratory · USLouisiana State University · USOregon State University · USPurdue University West Lafayette · USUniversity of South Carolina · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beneficial microbial associations enhance the fitness of most living organisms, and wood-feeding insects offer some of the most striking examples of this. Odontotaenius disjunctus is a wood-feeding beetle that possesses a digestive tract with four main compartments, each of which contains well-differentiated microbial populations, suggesting that anatomical properties and separation of these compartments may enhance energy extraction from woody biomass. Here, using integrated chemical analyses, we demonstrate that lignocellulose deconstruction and fermentation occur sequentially across compartments, and that selection for microbial groups and their metabolic pathways is facilitated by gut anatomical features. Metaproteogenomics showed that higher oxygen concentration in the midgut drives lignocellulose depolymerization, while a thicker gut wall in the anterior hindgut reduces oxygen diffusion and favours hydrogen accumulation, facilitating fermentation, homoacetogenesis and nitrogen fixation. We demonstrate that depolymerization continues in the posterior hindgut, and that the beetle excretes an energy- and nutrient-rich product on which its offspring subsist and develop. Our results show that the establishment of beneficial microbial partners within a host requires both the acquisition of the microorganisms and the formation of specific habitats within the host to promote key microbial metabolic functions. Together, gut anatomical properties and microbial functional assembly enable lignocellulose deconstruction and colony subsistence on an extremely nutrient-poor diet.

Indexed as

Gastrointestinal MicrobiomeAnimalsBacteriaColeopteraFermentationGastrointestinal TractHydrogenLigninOxygenPhylogenyWoodHydrogenLigninlignocelluloseOxygen

Identifiers

PMID30858574
OpenAlexW2922435891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.