Evidence map›Paper›PMID 30858471›Full record

ArticleScientific reports2019

Characterisation of genes differentially expressed in macrophages by virulent and attenuated Mycobacterium tuberculosis through RNA-Seq analysis.

Junghwan Lee, Sung-Gwon Lee, Kee K Kim, Yun-Ji Lim, Ji-Ae Choi, Soo-Na Cho, Chungoo Park, Chang-Hwa Song

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

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  14. microLife · 2023
    Article
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  19. Commonalities ofFrontiers in immunology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Junghwan LeeDepartment of Microbiology, College of Medicine, Chungnam National University, Daejeon, 35015, South Korea.
Sung-Gwon LeeSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, South Korea.
Kee K KimDepartment of Biochemistry, College of Natural Sciences, Chungnam National University, Daejeon, 34134, South Korea.
Yun-Ji LimDepartment of Microbiology, College of Medicine, Chungnam National University, Daejeon, 35015, South Korea.
Ji-Ae ChoiDepartment of Microbiology, College of Medicine, Chungnam National University, Daejeon, 35015, South Korea.
Soo-Na ChoDepartment of Microbiology, College of Medicine, Chungnam National University, Daejeon, 35015, South Korea.
Chungoo ParkSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, South Korea. chungoo@jnu.ac.kr.
Chang-Hwa SongDepartment of Microbiology, College of Medicine, Chungnam National University, Daejeon, 35015, South Korea. songch@cnu.ac.kr.
Chungnam National University · KRChonnam National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis (TB) remains a global healthcare issue. Understanding the host-pathogen interactions in TB is vital to develop strategies and therapeutic tools for the control of Mycobacterium tuberculosis (Mtb). In this study, transcriptome analyses of macrophages infected with either the virulent Mtb strain H37Rv (Rv) or the avirulent Mtb strain H37Ra (Ra) were carried out and 750 differentially expressed genes (DEGs) were identified. As expected, the DEGs were mainly involved in the induction of innate immune responses against mycobacterial infections. Among the DEGs, solute carrier family 7 member 2 (Slc7a2) was more strongly expressed in Ra-infected macrophages. Induction of SLC7A2 was important for macrophages to control the intracellular survival of Mtb. Our results imply that SLC7A2 plays an important role in macrophages during Mtb infection. Our findings could prove useful for the development of new therapeutic strategies to control TB infection.

Indexed as

Mycobacterium tuberculosisTuberculosisAmino Acid Transport Systems, BasicAnimalsCells, CulturedHost-Pathogen InteractionsMacrophagesMice, Inbred C57BLRNA-SeqVirulenceAmino Acid Transport Systems, BasicSlc7a2 protein, mouse

Identifiers

PMID30858471
PMCPMC6411972
OpenAlexW2920984981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.