Evidence map›Paper›PMID 30857553›Full record

ArticleMicrobiome2019

Gut microbiota in HIV-pneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction.

Meera K Shenoy, Douglas W Fadrosh, Din L Lin, William Worodria, Patrick Byanyima, Emmanuel Musisi, Sylvia Kaswabuli, Josephine Zawedde, Ingvar Sanyu, Emily Chang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Microbiome, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. What Makes the Gut-Lung Axis Working? From the Perspective of Microbiota and Traditional Chinese Medicine.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2024
    Review
  5. Article
  6. Intestinal Microbiota Dysbiosis Promotes Mucosal Barrier Damage and Immune Injury in HIV-Infected Patients.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2023
    Review
  7. Observational
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana.Frontiers in cellular and infection microbiology · 2021
    Article
  19. Observational
  20. A tale of two microbes.Microbes and infection · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Meera K ShenoyDivision of Gastroenterology, Department of Medicine, University of California San Francisco (UCSF), San Francisco, CA, 94143, USA.
Douglas W FadroshDivision of Gastroenterology, Department of Medicine, University of California San Francisco (UCSF), San Francisco, CA, 94143, USA.
Din L LinDivision of Gastroenterology, Department of Medicine, University of California San Francisco (UCSF), San Francisco, CA, 94143, USA.
William WorodriaInfectious Diseases Research Collaboration, Mulago Hospital, Makerere University, Kampala, Uganda.
Patrick ByanyimaInfectious Diseases Research Collaboration, Mulago Hospital, Makerere University, Kampala, Uganda.
Emmanuel MusisiInfectious Diseases Research Collaboration, Mulago Hospital, Makerere University, Kampala, Uganda.
Sylvia KaswabuliInfectious Diseases Research Collaboration, Mulago Hospital, Makerere University, Kampala, Uganda.
Josephine ZaweddeInfectious Diseases Research Collaboration, Mulago Hospital, Makerere University, Kampala, Uganda.
Ingvar SanyuInfectious Diseases Research Collaboration, Mulago Hospital, Makerere University, Kampala, Uganda.
Emily ChangHIV, Infectious Diseases and Global Medicine Division, Department of Medicine, San Francisco General Hospital, UCSF, San Francisco, CA, USA.
Serena FongHIV, Infectious Diseases and Global Medicine Division, Department of Medicine, San Francisco General Hospital, UCSF, San Francisco, CA, USA.
Kathryn McCauleyDivision of Gastroenterology, Department of Medicine, University of California San Francisco (UCSF), San Francisco, CA, 94143, USA.
J Lucian DavisDepartment of Pulmonary, Critical Care and Sleep Medicine, Yale School of Medicine, New Haven, CT, USA.
Laurence HuangHIV, Infectious Diseases and Global Medicine Division, Department of Medicine, San Francisco General Hospital, UCSF, San Francisco, CA, USA. laurence.huang@ucsf.edu.
Susan V LynchDivision of Gastroenterology, Department of Medicine, University of California San Francisco (UCSF), San Francisco, CA, 94143, USA. susan.lynch@ucsf.edu.ORCID 0000-0001-5695-7336
Mulago Hospital · UGUniversity of California, San Francisco · USSan Francisco General Hospital · USYale University · US

Funding

Inflammation, Aging, Microbes, Obstructive Lung Disease and Diffusion Abnormalities (I AM OLD-DA) Study - Diversity SupplementR01HL128156 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE, HUNT, PETER W · 2015 to 2024
$7.1M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
International HIV-associated Opportunistic Pneumonias (IHOP) StudyR01HL090335 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE · 2007 to 2011
$4.0M
Lung Microbiome in Cohorts of HIV-Infected Persons (Lung MicroCHIP) StudyU01HL098964 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE · 2009 to 2013
$3.9M
TB and Other Pulmonary Complications of AIDS Research Training ProgramD43TW009607 · FIC · YALE UNIVERSITY · PI DAVIS, JOHN LUCIAN, KATAMBA, ACHILLES · 2013 to 2022
$3.2M
Patient-Oriented Research and Mentoring in PneumocystisK24HL087713 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE · 2006 to 2018
$1.8M
NHLBI NIH HHS K24 HL087713NHLBI NIH HHS R01 HL090335NHLBI NIH HHS U01 HL098964
6 · The paper itself

Abstract

Pneumonia is common and frequently fatal in HIV-infected patients, due to rampant, systemic inflammation and failure to control microbial infection. While airway microbiota composition is related to local inflammatory response, gut microbiota has been shown to correlate with the degree of peripheral immune activation (IL6 and IP10 expression) in HIV-infected patients. We thus hypothesized that both airway and gut microbiota are perturbed in HIV-infected pneumonia patients, that the gut microbiota is related to peripheral CD4+ cell counts, and that its associated products differentially program immune cell populations necessary for controlling microbial infection in CD4-high and CD4-low patients. To assess these relationships, paired bronchoalveolar lavage and stool microbiota (bacterial and fungal) from a large cohort of Ugandan, HIV-infected patients with pneumonia were examined, and in vitro tests of the effect of gut microbiome products on macrophage effector phenotypes performed. While lower airway microbiota stratified into three compositionally distinct microbiota as previously described, these were not related to peripheral CD4 cell count. In contrast, variation in gut microbiota composition significantly related to CD4 cell count, lung microbiota composition, and patient mortality. Compared with patients with high CD4+ cell counts, those with low counts possessed more compositionally similar airway and gut microbiota, evidence of microbial translocation, and their associated gut microbiome products reduced macrophage activation and IL-10 expression and increased IL-1β expression in vitro. These findings suggest that the gut microbiome is related to CD4 status and plays a key role in modulating macrophage function, critical to microbial control in HIV-infected patients with pneumonia.

Indexed as

MicrobiotaBacteriaBronchoalveolar Lavage FluidCD4 Lymphocyte CountChemokine CXCL10Cohort StudiesDNA, BacterialDNA, RibosomalFecesHIV InfectionsHumansInterleukin-6LungMacrophagesPneumoniaRNA, Ribosomal, 16SChemokine CXCL10CXCL10 protein, humanDNA, BacterialDNA, RibosomalIL6 protein, humanInterleukin-6RNA, Ribosomal, 16S

Identifiers

PMID30857553
PMCPMC6413461
OpenAlexW2939573312

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.