Evidence map›Paper›PMID 30857256›Full record

ArticleGenes2019

Volatile Evolution of Long Non-Coding RNA Repertoire in Retinal Pigment Epithelium: Insights from Comparison of Bovine and Human RNA Expression Profiles.

Olga A Postnikova, Igor B Rogozin, William Samuel, German Nudelman, Vladimir N Babenko, Eugenia Poliakov, T Michael Redmond

Open access · goldAbstract read
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Stereochemistry Enhances Potency, Efficacy, and Durability ofTranslational vision science & technology · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Olga A PostnikovaLaboratory of Retinal Cell and Molecular Biology, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA. olga.postnikova@nih.gov.
Igor B RogozinNational Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20894, USA. rogozin@ncbi.nlm.nih.gov.
William SamuelLaboratory of Retinal Cell and Molecular Biology, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA. Samuelw@nei.nih.gov.
German NudelmanDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Samuelw@nei.nih.gov.
Vladimir N BabenkoLaboratory of Neuropathology Modeling, The Federal Research Center Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia. bob@bionet.nsc.ru.
Eugenia PoliakovLaboratory of Retinal Cell and Molecular Biology, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA. poliakove@nei.nih.gov.
T Michael RedmondLaboratory of Retinal Cell and Molecular Biology, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA. redmondd@helix.nih.gov.
National Institutes of Health · USIcahn School of Medicine at Mount Sinai · USInstitute of Cytology and Genetics · RUNational Center for Biotechnology Information · US

Funding

Signaling in the retina and retinal pigment epitheliumZIAEY000444 · NEI · NATIONAL EYE INSTITUTE · PI REDMOND, T. MICHAEL · 2009 to 2025
$23.4M
6 · The paper itself

Abstract

Currently, several long non-coding RNAs (lncRNAs) (TUG1, MALAT1, MEG3 and others) have been discovered to regulate normal visual function and may potentially contribute to dysfunction of the retina. We decided to extend these analyses of lncRNA genes to the retinal pigment epithelium (RPE) to determine whether there is conservation of RPE-expressed lncRNA between human and bovine genomes. We reconstructed bovine RPE lncRNAs based on genome-guided assembly. Next, we predicted homologous human transcripts based on whole genome alignment. We found a small set of conserved lncRNAs that could be involved in signature RPE functions that are conserved across mammals. However, the fraction of conserved lncRNAs in the overall pool of lncRNA found in RPE appeared to be very small (less than 5%), perhaps reflecting a fast and flexible adaptation of the mammalian eye to various environmental conditions.

Indexed as

Evolution, MolecularAnimalsCattleCell LineConserved SequenceHumansRetinal Pigment EpitheliumRNA, Long NoncodingSequence AlignmentRNA, Long Noncodingbovine lncRNAevolutionary conservationlncRNARPE

Identifiers

PMID30857256
PMCPMC6471466
OpenAlexW2921108593

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.