Evidence map›Paper›PMID 30856213›Full record

ArticlePloS one2019

Diurnal biomarkers reveal key photosynthetic genes associated with increased oil palm yield.

Bee Keat Neoh, Yick Ching Wong, Huey Fang Teh, Theresa Lee Mei Ng, Soon Huat Tiong, Tony Eng Keong Ooi, Mohd Zairey Md Zain, Mohd Amiron Ersad, Chee Keng Teh, Heng Leng Lee and 5 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Rapeseed (Frontiers in plant science · 2022
    Article
  3. Chromosome identification in oil palm (Elaeis guineensis) using in situ hybridization with massive pools of single copy oligonucleotides and transferability across Arecaceae species.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Bee Keat NeohSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.ORCID 0000-0002-6973-696X
Yick Ching WongSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Huey Fang TehSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Theresa Lee Mei NgSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Soon Huat TiongSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Tony Eng Keong OoiSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.ORCID 0000-0002-7719-2990
Mohd Zairey Md ZainSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Mohd Amiron ErsadSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Chee Keng TehSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Heng Leng LeeSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.
Siti Khadijah Mohd RaisSime Darby Research, Banting, Selangor Darul Ehsan, Malaysia.
See Siang CheahSime Darby Research, Pulau Carey, Selangor Darul Ehsan, Malaysia.
Fook Tim ChewDepartment of Biological Sciences, Faculty of Science, National University of Singapore, Singapore.ORCID 0000-0003-1337-5146
Harikrishna KulaveerasingamSime Darby Research, Banting, Selangor Darul Ehsan, Malaysia.
David Ross AppletonSime Darby Technology Centre Sdn Bhd, Serdang, Selangor Darul Ehsan, Malaysia.ORCID 0000-0001-8570-1428

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate limiters of photosynthate assimilation in the carbon-source limited crop, oil palm (Elaeis guineensis Jacq.), we measured differential metabolite, gene expression and the gas exchange in leaves in an open field for palms with distinct mesocarp oil content. We observed higher concentrations of glucose 1-phosphate, glucose 6-phosphate, sucrose 6-phosphate, and sucrose in high-oil content palms with the greatest difference being at 11:00 (p-value ≤0.05) immediately after the period of low morning light intensity. Three important photosynthetic genes were identified using differentially expressed gene analysis (DEGs) and were found to be significantly enriched through Gene Ontology (GO) and pathway enrichment: chlorophyll a-b binding protein (CAB-13), photosystem I (PSI), and Ferredoxin-NADP reductase (FNR), particularly for sampling points at non-peak light (11:00 and 19:00), ranging from 3.3-fold (PSI) and 5.6-fold (FNR) to 10.3-fold (CAB-13). Subsequent gas exchange measurements further supported increased carbon assimilation through higher level of internal CO2 concentration (Ci), stomatal conductance (gs) and transpiration rate (E) in high-oil content palms. The selection for higher expression of key photosynthesis genes together with CO2 assimilation under low light is likely to be important for crop improvement, in particular at full maturity and under high density planting regimes where light competition exists between palms.

Indexed as

ArecaceaeCarbon DioxideCircadian RhythmGene Expression Regulation, PlantPalm OilPhotosynthesisPlant LeavesPlant ProteinsCarbon DioxidePalm OilPlant Proteins

Identifiers

PMID30856213
PMCPMC6411157

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.