Evidence map›Paper›PMID 30855248›Full record

ArticleJournal of synchrotron radiation2019

MXCuBE2: the dawn of MXCuBE Collaboration.

Marcus Oscarsson, Antonia Beteva, David Flot, Elspeth Gordon, Matias Guijarro, Gordon Leonard, Sean McSweeney, Stephanie Monaco, Christoph Mueller-Dieckmann, Max Nanao and 48 more

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Influence of heme and pH on the oligomeric states of Brucella melitensis bacterioferritin.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Towards routine accurate electron-density studies of biological macromolecules.Acta crystallographica. Section D, Structural biology · 2026
    Article
  3. Cefdinir binding to a class A β-lactamase revealed by serial cryo-crystallography.Acta crystallographica. Section D, Structural biology · 2026
    Article
  4. Article
  5. Automated workflows for strategy computation and data collection at synchrotron beamlines.Acta crystallographica. Section D, Structural biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Other Techniques.Advances in biochemical engineering/biotechnology · 2026
    Review
  10. Combining MicroED and native mass spectrometry for structural discovery of enzyme-small molecule complexes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Enhanced capabilities for multi-crystal data collection based on double mesh scans.Acta crystallographica. Section D, Structural biology · 2025
    Article
  12. Article
  13. High-throughput protein crystallography to empower natural product-based drug discovery.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

58 authors.

Marcus OscarssonESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Antonia BetevaESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
David FlotESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Elspeth GordonESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Matias GuijarroESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Gordon LeonardESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.ORCID 0000-0001-5030-0122
Sean McSweeneyESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Stephanie MonacoESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Christoph Mueller-DieckmannESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.ORCID 0000-0003-3625-2747
Max NanaoESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Didier NurizzoESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Alexander N PopovESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
David von StettenESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Olof SvenssonESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.
Vicente Rey-BakaikoaTXO Pedro de Alejandria 2-2C Pamplona, Spain.ORCID 0000-0003-2987-6391
Idrissou ChadoSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Leonard M G ChavasSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.ORCID 0000-0001-9973-9355
Laurent GadeaSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Patrick GourhantSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Tatiana IsabetSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Pierre LegrandSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Martin SavkoSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Serena SiriguSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
William ShepardSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Andrew ThompsonSynchrotron SOLEIL, 91192 Gif-sur-Yvette Cedex, France.
Uwe MuellerMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Jie NanMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Mikel EguiraunMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Fredrick BolmstenMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Alberto NardellaMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Antonio Milàn-OteroMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Marjolein ThunnissenMAX IV Laboratory, Lund University, SE-221 00 Lund, Sweden.
Michael HellmigHelmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, D-12489 Berlin, Germany.
Alexandra KastnerHelmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, D-12489 Berlin, Germany.
Lukas SchmuckermaierHelmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, D-12489 Berlin, Germany.
Martin GerlachHelmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, D-12489 Berlin, Germany.
Christian FeilerHelmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, D-12489 Berlin, Germany.
Manfred S WeissHelmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, D-12489 Berlin, Germany.
Matthew W BowlerEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.
Alexandre GobboEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.
Gergely PappEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.ORCID 0000-0002-5702-843X
Jeremy SinoirEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.
Andrew A McCarthyEuropean Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, 38042 Grenoble, France.ORCID 0000-0003-4478-0136
Ivars KarpicsHamburg Unit c/o DESY, European Molecular Biology Laboratory (EMBL), Notkestrasse 85, 22603 Hamburg, Germany.
Marina NikolovaHamburg Unit c/o DESY, European Molecular Biology Laboratory (EMBL), Notkestrasse 85, 22603 Hamburg, Germany.
Gleb BourenkovHamburg Unit c/o DESY, European Molecular Biology Laboratory (EMBL), Notkestrasse 85, 22603 Hamburg, Germany.
Thomas SchneiderHamburg Unit c/o DESY, European Molecular Biology Laboratory (EMBL), Notkestrasse 85, 22603 Hamburg, Germany.ORCID 0000-0001-6955-7374
Jordi AndreuCELLS-ALBA Synchrotron Light Source, 08290 Cerdanyola del Vallès, Spain.ORCID 0000-0003-0865-5741
Guifré CuníCELLS-ALBA Synchrotron Light Source, 08290 Cerdanyola del Vallès, Spain.ORCID 0000-0002-7092-4749
Judith JuanhuixCELLS-ALBA Synchrotron Light Source, 08290 Cerdanyola del Vallès, Spain.ORCID 0000-0003-3728-8215
Roeland BoerCELLS-ALBA Synchrotron Light Source, 08290 Cerdanyola del Vallès, Spain.
Rasmus FoghGlobal Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Peter KellerGlobal Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Claus FlensburgGlobal Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Wlodek PaciorekGlobal Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Clemens VonrheinGlobal Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Gerard BricogneGlobal Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AK, UK.
Daniele de SanctisESRF - The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France.

Funding

Horizon 2020 programme of the European Union and by Vetenskapsrådet 653706Sixth Framework Programme LHSG-CT-2003-503420
6 · The paper itself

Abstract

MXCuBE2 is the second-generation evolution of the MXCuBE beamline control software, initially developed and used at ESRF - the European Synchrotron. MXCuBE2 extends, in an intuitive graphical user interface (GUI), the functionalities and data collection methods available to users while keeping all previously available features and allowing for the straightforward incorporation of ongoing and future developments. MXCuBE2 introduces an extended abstraction layer that allows easy interfacing of any kind of macromolecular crystallography (MX) hardware component, whether this is a diffractometer, sample changer, detector or optical element. MXCuBE2 also works in strong synergy with the ISPyB Laboratory Information Management System, accessing the list of samples available for a particular experimental session and associating, either from instructions contained in ISPyB or from user input via the MXCuBE2 GUI, different data collection types to them. The development of MXCuBE2 forms the core of a fruitful collaboration which brings together several European synchrotrons and a software development factory and, as such, defines a new paradigm for the development of beamline control platforms for the European MX user community.

Indexed as

graphical user interfacemacromolecular crystallographyMXCuBEsoftware collaborationsynchrotron beamline control software

Identifiers

PMID30855248
PMCPMC6412183

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.