Evidence map›Paper›PMID 30854504›Full record

ArticleJCO precision oncology2018

Genomic Characterization of Upper-Tract Urothelial Carcinoma in Patients With Lynch Syndrome.

Timothy F Donahue, Aditya Bagrodia, François Audenet, Mark T A Donoghue, Eugene K Cha, John P Sfakianos, Dahlia Sperling, Hikmat Al-Ahmadie, Mark Clendenning, Christophe Rosty and 13 more

Open access · hybridAbstract read
In one paragraph

Article in JCO precision oncology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 1 institution in 1 country.

Timothy F Donahue *Memorial Sloan Kettering Cancer Center.
Aditya BagrodiaUniversity of Texas Southwest Medical Center, Dallas, TX.
François AudenetMemorial Sloan Kettering Cancer Center.
Mark T A DonoghueMemorial Sloan Kettering Cancer Center.
Eugene K ChaMemorial Sloan Kettering Cancer Center.
John P SfakianosMount Sinai Hospital.
Dahlia SperlingMemorial Sloan Kettering Cancer Center.
Hikmat Al-AhmadieMemorial Sloan Kettering Cancer Center.
Mark ClendenningUniversity of Melbourne, Parkville, Victoria, Australia.
Christophe RostyUniversity of Melbourne, Parkville, Victoria, Australia.
Daniel D BuchananUniversity of Melbourne, Parkville, Victoria, Australia.
Mark JenkinsUniversity of Melbourne, Parkville, Victoria, Australia.
John HopperUniversity of Melbourne, Parkville, Victoria, Australia.
Ingrid WinshipUniversity of Melbourne, Parkville, Victoria, Australia.
Allyson S TempletonFred Hutchinson Cancer Research Center, Seattle, WA.
Michael F WalshMemorial Sloan Kettering Cancer Center.
Zsofia K StadlerMemorial Sloan Kettering Cancer Center.
Gopa IyerMemorial Sloan Kettering Cancer Center.
Barry TaylorMemorial Sloan Kettering Cancer Center.
Jonathan ColemanMemorial Sloan Kettering Cancer Center.
Noralane M LindorMayo Clinic, Scottsdale, AZ.
David B SolitMemorial Sloan Kettering Cancer Center.
Bernard H BochnerMemorial Sloan Kettering Cancer Center.
St Michael's Hospital · GB

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
ONTARIO REGISTRY FOR STUDIES OF FAMILIAL COLON CANCERU01CA074783 · NCI · CANCER CARE ONTARIO · PI GALLINGER, STEVEN · 1997 to 2008
$12.5M
SPORE in Bladder CancerP50CA221745 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI OSTROVNAYA, IRINA · 2018 to 2024
$11.8M
Colon Cancer Family Registry CohortUM1CA167551 · NCI · STANFORD UNIVERSITY · PI HAILE, ROBERT WILLIAM, JENKINS, MARK A · 2013 to 2017
$11.3M
FAMILIAL COLORECTAL NEOPLASIA COLLABORATIVE GROUPU01CA074800 · NCI · MAYO CLINIC ROCHESTER · PI LINDOR, NORALANE MOREY · 1997 to 2007
$9.1M
AUSTRALASIAN COLORECTAL CANCER FAMILY REGISTRYU01CA097735 · NCI · UNIVERSITY OF MELBOURNE · PI HOPPER, JOHN L · 2002 to 2007
$6.9M
The Colon Cancer Family Registry: AustralasiaU24CA097735 · NCI · UNIVERSITY OF MELBOURNE · PI HOPPER, JOHN L · 2008 to 2011
$6.2M
The Familial Colorectal Neoplasia Collaborative GroupU24CA074800 · NCI · MAYO CLINIC ROCHESTER · PI LINDOR, NORALANE MOREY, THIBODEAU, STEPHEN NORMAN · 2008 to 2011
$5.3M
The Colon Cancer Family Registry: OntarioU24CA074783 · NCI · CANCER CARE ONTARIO · PI GALLINGER, STEVEN · 2008 to 2011
$4.1M
NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA221745NCI NIH HHS U01 CA074783NCI NIH HHS U01 CA074800NCI NIH HHS U01 CA097735NCI NIH HHS U24 CA074783NCI NIH HHS U24 CA074800NCI NIH HHS U24 CA097735NCI NIH HHS UM1 CA167551
6 · The paper itself

Abstract

purposePatients with Lynch syndrome (LS) have a significantly increased risk of developing upper-tract urothelial carcinoma (UTUC). Here, we sought to identify differences in the patterns of mutational changes in LS-associated versus sporadic UTUCs. PATIENTS AND

methodsWe performed targeted sequencing of 17 UTUCs from patients with documented LS-associated germline mutations (LS-UTUCs) using the Memorial Sloan Kettering Integrated Molecular Profiling of Actionable Cancer Targets targeted exon capture assay and compared the results with those from a recently characterized cohort of 82 patients with sporadic UTUC.

resultsPatients with LS-UTUC were significantly younger, had had less exposure to tobacco, and more often presented with a ureteral primary site compared with patients with sporadic UTUC. The median number of mutations per tumor was significantly greater in LS-UTUC tumors than in tumors from the sporadic cohort (58; interquartile range [IQR], 47-101

conclusionLSand sporadic UTUCs have overlapping but distinct genetic signatures. LS-UTUC is associated with hypermutation and a significantly higher prevalence of

Identifiers

PMID30854504
PMCPMC6404976
OpenAlexW2784355197

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.