Evidence map›Paper›PMID 30854249›Full record

ArticleNature biomedical engineering2018

Live-cell phenotypic-biomarker microfluidic assay for the risk stratification of cancer patients via machine learning.

Michael S Manak, Jonathan S Varsanik, Brad J Hogan, Matt J Whitfield, Wendell R Su, Nikhil Joshi, Nicolai Steinke, Andrew Min, Delaney Berger, Robert J Saphirstein and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature biomedical engineering, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 78 citations in OpenAlex.

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  7. Interpretable Fine-Grained Phenotypes of Subcellular Dynamics via Unsupervised Deep Learning.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  8. Impact of Nanomedicine in Women's Metastatic Breast Cancer.Small (Weinheim an der Bergstrasse, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Michael S ManakCellanyx Diagnostics, Beverly, MA, USA.
Jonathan S VarsanikCellanyx Diagnostics, Beverly, MA, USA.
Brad J HoganCellanyx Diagnostics, Beverly, MA, USA.
Matt J WhitfieldCellanyx Diagnostics, Beverly, MA, USA.
Wendell R SuCellanyx Diagnostics, Beverly, MA, USA.
Nikhil JoshiCellanyx Diagnostics, Beverly, MA, USA.
Nicolai SteinkeCellanyx Diagnostics, Beverly, MA, USA.
Andrew MinCellanyx Diagnostics, Beverly, MA, USA.
Delaney BergerCellanyx Diagnostics, Beverly, MA, USA.
Robert J SaphirsteinCellanyx Diagnostics, Beverly, MA, USA.
Gauri DixitCellanyx Diagnostics, Beverly, MA, USA.
Thiagarajan MeyyappanCellanyx Diagnostics, Beverly, MA, USA.
Hui-May ChuAnoixis Corporation , Natick, MA, USA.
Kevin B KnopfCancer Commons, Los Altos, CA, USA.
David M AlbalaAssociated Medical Professionals of New York, New York, NY, USA.
Grannum R SantDepartment of Urology, Tufts University School of Medicine, Boston, MA, USA.
Ashok C ChanderCellanyx Diagnostics, Beverly, MA, USA. ashok@cellanyx.com.
Advanced Cell Diagnostics (United States) · USCreative Commons · USTufts University · US

Funding

Quantitative Measurements and Modeling of the Mitotic CheckpointR01GM077238 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAH, JAGESH V · 2007 to 2011
$2.0M
NIGMS NIH HHS R01 GM077238
6 · The paper itself

Abstract

The risk stratification of prostate cancer and breast cancer tumours from patients relies on histopathology, selective genomic testing, or on other methods employing fixed formalin tissue samples. However, static biomarker measurements from bulk fixed-tissue samples provide limited accuracy and actionability. Here, we report the development of a live-primary-cell phenotypic-biomarker assay with single-cell resolution, and its validation with prostate cancer and breast cancer tissue samples for the prediction of post-surgical adverse pathology. The assay includes a collagen-I/fibronectin extracellular-matrix formulation, dynamic live-cell biomarkers, a microfluidic device, machine-vision analysis and machine-learning algorithms, and generates predictive scores of adverse pathology at the time of surgery. Predictive scores for the risk stratification of 59 prostate cancer patients and 47 breast cancer patients, with values for area under the curve in receiver-operating-characteristic curves surpassing 80%, support the validation of the assay and its potential clinical applicability for the risk stratification of cancer patients.

Identifiers

PMID30854249
PMCPMC6407716
OpenAlexW2892339484

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.