Evidence map›Paper›PMID 30853418›Full record

ArticleCell chemical biology2019

Covalent Modification and Regulation of the Nuclear Receptor Nurr1 by a Dopamine Metabolite.

John M Bruning, Yan Wang, Francesca Oltrabella, Boxue Tian, Svetlana A Kholodar, Harrison Liu, Paulomi Bhattacharya, Su Guo, James M Holton, Robert J Fletterick and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

John M BruningPharmaceutical Sciences and Pharmacogenomics Graduate Program, University of California San Francisco, San Francisco, CA 94158, USA.
Yan WangDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Francesca OltrabellaDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA.
Boxue TianDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Svetlana A KholodarDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Harrison LiuBioengineering Graduate Program, University of California San Francisco, San Francisco, CA 94158, USA.
Paulomi BhattacharyaDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Su GuoDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA.
James M HoltonDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.
Robert J FletterickDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.
Matthew P JacobsonDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA.
Pamela M EnglandDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA 94158, USA. Electronic address: pamela.england@ucsf.edu.
University of California, San Francisco · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2007 to 2018
$48.8M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Eliminating Critical Systematic Errors In Structural Biology With Next-Generation SimulationR01GM124149 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOLTON, JAMES M · 2017 to 2024
$2.5M
Selective modulators for the nuclear receptor Nurr1R01NS108404 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ENGLAND, PAMELA MICHAEL · 2018 to 2022
$2.2M
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM124149NINDS NIH HHS R01 NS108404
6 · The paper itself

Abstract

Nurr1, a nuclear receptor essential for the development, maintenance, and survival of midbrain dopaminergic neurons, is a potential therapeutic target for Parkinson's disease, a neurological disorder characterized by the degeneration of these same neurons. Efforts to identify Nurr1 agonists have been hampered by the recognition that it lacks several classic regulatory elements of nuclear receptor function, including the canonical ligand-binding pocket. Here we report that the dopamine metabolite 5,6-dihydroxyindole (DHI) binds directly to and modulates the activity of Nurr1. Using biophysical assays and X-ray crystallography, we show that DHI binds to the ligand-binding domain within a non-canonical pocket, forming a covalent adduct with Cys566. In cultured cells and zebrafish, DHI stimulates Nurr1 activity, including the transcription of target genes underlying dopamine homeostasis. These findings suggest avenues for developing synthetic Nurr1 ligands to ameliorate the symptoms and progression of Parkinson's disease.

Indexed as

AnimalsBinding SitesCell Line, TumorCrystallography, X-RayDopamineHumansIndolesLarvaMolecular Dynamics SimulationNuclear Receptor Subfamily 4, Group A, Member 2Oxidative StressProtein DomainsRecombinant ProteinsThermodynamicsTranscription, GeneticZebrafish5,6-dihydroxyindoleDopamineIndolesNuclear Receptor Subfamily 4, Group A, Member 2Recombinant Proteins5,6-dihydroxyindole5,6-dihydroxyindolequinone5,6-indolequinonecysteine adductDHIDHICAdopamine homeostasisdopamine metabolitedopamine oxidationIQligand-binding domainligand-binding pocketNr4A2nuclear receptornuclear receptor related 1 proteinNurr1Parkinson's diseaseredox sensor

Identifiers

PMID30853418
PMCPMC7185887
OpenAlexW2951834702

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.