Evidence map›Paper›PMID 30852163›Full record

ArticleEBioMedicine2019

Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains.

Olivier Cunrath, Dominik M Meinel, Pauline Maturana, Joseph Fanous, Julien M Buyck, Pamela Saint Auguste, Helena M B Seth-Smith, Jonas Körner, Christoph Dehio, Vincent Trebosc and 4 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 52 citations in OpenAlex.

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  17. Differentially Expressed Genes ofInfection and drug resistance · 2022
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  18. Outer membrane permeability: Antimicrobials and diverse nutrients bypass porins inProceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Olivier CunrathBiozentrum, University Hospital Basel, Switzerland.
Dominik M MeinelClinical Microbiology, University Hospital Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, CH-4056 Basel, Switzerland.
Pauline MaturanaBiozentrum, University Hospital Basel, Switzerland.
Joseph FanousBiozentrum, University Hospital Basel, Switzerland.
Julien M BuyckBiozentrum, University Hospital Basel, Switzerland.
Pamela Saint AugusteBiozentrum, University Hospital Basel, Switzerland.
Helena M B Seth-SmithClinical Microbiology, University Hospital Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, CH-4056 Basel, Switzerland.
Jonas KörnerBiozentrum, University Hospital Basel, Switzerland.
Christoph DehioBiozentrum, University Hospital Basel, Switzerland.
Vincent TreboscBioVersys AG, Hochbergerstrasse 60C, Technology Park, 4057 Basel, Switzerland.
Christian KemmerBioVersys AG, Hochbergerstrasse 60C, Technology Park, 4057 Basel, Switzerland.
Richard NeherBiozentrum, University Hospital Basel, Switzerland.
Adrian EgliClinical Microbiology, University Hospital Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, CH-4056 Basel, Switzerland.
Dirk BumannBiozentrum, University Hospital Basel, Switzerland. Electronic address: dirk.bumann@unibas.ch.
University Hospital of Basel · CHUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEfflux pumps mediate antimicrobial resistance in several WHO critical priority bacterial pathogens. However, most available data come from laboratory strains. The quantitative relevance of efflux in more relevant clinical isolates remains largely unknown.

methodsWe developed a versatile method for genetic engineering in multi-drug resistant (MDR) bacteria, and used this method to delete tolC and specific antibiotic-resistance genes in 18 representative MDR clinical E. coli isolates. We determined efflux activity and minimal inhibitory concentrations for a diverse set of clinically relevant antibiotics in these mutants. We also deleted oprM in MDR P. aeruginosa strains and determined the impact on antibiotic susceptibility.

findingstolC deletion abolished detectable efflux activity in 15 out of 18 tested E. coli strains, and modulated antibiotic susceptibility in many strains. However, all mutant strains retained MDR status, primarily because of other, antibiotic-specific resistance genes. Deletion of oprM altered antibiotic susceptibility in a fraction of clinical P. aeruginosa isolates.

interpretationEfflux modulates antibiotic resistance in clinical MDR isolates of E. coli and P. aeruginosa. However, when other antimicrobial-resistance mechanisms are present, inhibition of MDR efflux pumps alone is often not sufficient to restore full susceptibility even for antibiotics with a dramatic impact of efflux in laboratory strains. We propose that development of novel antibiotics should include target validation in clinical MDR isolates. FUND: Innovative Medicines Initiative of European Union and EFPIA, Schweizerischer Nationalfonds, Swiss National Research Program 72, EU Marie Skłodowska-Curie program. The funders played no role in design, data collection, data analysis, interpretation, writing of the report, and in the decision to submit the paper for publication.

Indexed as

Anti-Bacterial AgentsBacteremiaBacterial Outer Membrane ProteinsDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli ProteinsGene DeletionHumansMembrane Transport ProteinsMicrobial Sensitivity TestsPseudomonas aeruginosaWhole Genome SequencingAnti-Bacterial AgentsBacterial Outer Membrane ProteinsEscherichia coli ProteinsMembrane Transport ProteinsOprM protein, Pseudomonas aeruginosatolC protein, E coliAntibiotic resistanceClinical strainsEffluxGenetic engineering

Identifiers

PMID30852163
PMCPMC6443642
OpenAlexW2921068029

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.