Evidence map›Paper›PMID 30851876›Full record

ArticleBiophysical journal2019

Coarse-Grained Simulation of Full-Length Integrin Activation.

Tamara C Bidone, Anirban Polley, Jaehyeok Jin, Tristan Driscoll, Daniel V Iwamoto, David A Calderwood, Martin A Schwartz, Gregory A Voth

Abstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Prediction of αBiophysical journal · 2025
    Article
  3. Article
  4. Article
  5. Conformational response of αStructure (London, England : 1993) · 2025
    Article
  6. Data-driven prediction of αBiophysical journal · 2024
    Article
  7. Contributions of the individual domains of αCytoskeleton (Hoboken, N.J.) · 2024
    Article
  8. Article
  9. Article
  10. Multiscale models of integrins and cellular adhesions.Current opinion in structural biology · 2023
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. New perspectives on integrin-dependent adhesions.Current opinion in cell biology · 2020
    Review
  16. Multiscale model of integrin adhesion assembly.PLoS computational biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tamara C BidoneDepartment of Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois.
Anirban PolleyDepartment of Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois.
Jaehyeok JinDepartment of Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois.
Tristan DriscollYale Cardiovascular Research Center and Department of Internal Medicine (Section of Cardiovascular Medicine), Yale School of Medicine, New Haven, Connecticut.
Daniel V IwamotoDepartment of Pharmacology, New Haven, Connecticut.
David A CalderwoodDepartment of Pharmacology, New Haven, Connecticut; Department of Cell Biology, Yale University, New Haven, Connecticut.
Martin A SchwartzDepartments of Cell Biology and Biomedical Engineering, Yale University, New Haven, Connecticut; Yale Cardiovascular Research Center and Department of Internal Medicine (Section of Cardiovascular Medicine), Yale School of Medicine, New Haven, Connecticut.
Gregory A VothDepartment of Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois. Electronic address: gavoth@uchicago.edu.

Funding

Translational CoreP01DK057751 · NIDDK · YALE UNIVERSITY · PI YANG, XIAOYONG · 2001 to 2020
$25.6M
INSTITUTIONAL NATIONAL RESEARCH SERVICE AWARDT32GM007324 · NIGMS · YALE UNIVERSITY · PI BENNETT, ANTON M · 1987 to 2022
$6.2M
Unraveling Integrin Mechanotransduction with Molecular ImagingF32GM119286 · NIGMS · YALE UNIVERSITY · PI DRISCOLL, TRISTAN P · 2016 to 2017
$112k
NIDDK NIH HHS P01 DK057751NIGMS NIH HHS F32 GM119286NIGMS NIH HHS T32 GM007324
6 · The paper itself

Abstract

Integrin conformational dynamics are critical to their receptor and signaling functions in many cellular processes, including spreading, adhesion, and migration. However, assessing integrin conformations is both experimentally and computationally challenging because of limitations in resolution and dynamic sampling. Thus, structural changes that underlie transitions between conformations are largely unknown. Here, focusing on integrin αvβ

Indexed as

Molecular Dynamics SimulationIntegrinsMutationProtein ConformationIntegrins

Identifiers

PMID30851876
PMCPMC6428961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.