Evidence map›Paper›PMID 30849940›Full record

ArticleBMC microbiology2019

Transposon mutagenesis and identification of mutated genes in growth-delayed Edwardsiella ictaluri.

Safak Kalindamar, Jingjun Lu, Hossam Abdelhamed, Hasan C Tekedar, Mark L Lawrence, Attila Karsi

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Modulation of Bacterial Fitness and Virulence Through Antisense RNAs.Frontiers in cellular and infection microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Safak KalindamarDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Jingjun LuDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Hossam AbdelhamedDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Hasan C TekedarDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Mark L LawrenceDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Attila KarsiDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA. karsi@cvm.msstate.edu.ORCID 0000-0001-6845-3346
Mississippi State University · US

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
NIGMS NIH HHS P20 GM103476
6 · The paper itself

Abstract

backgroundEdwardsiella ictaluri is a Gram-negative facultative intracellular anaerobe and the etiologic agent of enteric septicemia of channel catfish (ESC). To the catfish industry, ESC is a devastating disease due to production losses and treatment costs. Identification of virulence mechanisms of E. ictaluri is critical to developing novel therapeutic approaches for the disease. Here, we report construction of a transposon insertion library and identification of mutated genes in growth-delayed E. ictaluri colonies. We also provide safety and efficacy of transposon insertion mutants in catfish.

resultsAn E. ictaluri transposon insertion library with 45,000 transposants and saturating 30.92% of the TA locations present in the E. ictaluri genome was constructed. Transposon end mapping of 250 growth-delayed E. ictaluri colonies and bioinformatic analysis of sequences revealed 56 unique E. ictaluri genes interrupted by the MAR2xT7 transposon, which are involved in metabolic and cellular processes and mostly localized in the cytoplasm or cytoplasmic membrane. Of the 56 genes, 30 were associated with bacterial virulence. Safety and vaccine efficacy testing of 19 mutants showed that mutants containing transposon insertions in hypothetical protein (Eis::004), and Fe-S cluster assembly protein (IscX, Eis::039), sulfurtransferase (TusA, Eis::158), and universal stress protein A (UspA, Eis::194) were safe and provided significant protection (p < 0.05) against wild-type E. ictaluri.

conclusionsThe results indicate that random transposon mutagenesis causing growth-delayed phenotype results in identification bacterial virulence genes, and attenuated strains with transposon interrupted virulence genes could be used as vaccine to activate fish immune system.

Indexed as

DNA Transposable ElementsAnimalsBacterial VaccinesComputational BiologyEdwardsiella ictaluriEnterobacteriaceae InfectionsFish DiseasesGene DeletionGenome, BacterialIctaluridaeMutagenesisMutationPhenotypeVaccines, AttenuatedVirulenceBacterial VaccinesDNA Transposable ElementsVaccines, AttenuatedCatfishEnteric septicemiapMAR2xT7Type III secretion systemVirulence

Identifiers

PMID30849940
PMCPMC6408766
OpenAlexW2938913195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.