Evidence map›Paper›PMID 30848458›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

Leveraging Big Data to Transform Drug Discovery.

Benjamin S Glicksberg, Li Li, Rong Chen, Joel Dudley, Bin Chen

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Benjamin S GlicksbergBakar Computational Health Sciences Institute, University of California, San Francisco, CA, USA.
Li LiDepartment of Genetics and Genomic Sciences, Institute of Next Generation Healthcare, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Rong ChenDepartment of Genetics and Genomic Sciences, Institute of Next Generation Healthcare, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Joel DudleyDepartment of Genetics and Genomic Sciences, Institute of Next Generation Healthcare, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Bin ChenBakar Computational Health Sciences Institute, University of California, San Francisco, CA, USA. bin.chen@hc.msu.edu.

Funding

Illuminating Druggable Dark MatterU24DK116214 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAN, LILY Y, MCMANUS, MICHAEL T · 2017 to 2022
$12.9M
Integrating transcriptomic, proteomic and pharmacogenomic data to inform individualized therapy in cancersK01ES028047 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, BIN · 2017 to 2020
$682k
Targeting glucose metabolism for the treatment of Hepatocellular CarcinomaR21TR001743 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, BIN · 2017 to 2018
$560k
NCATS NIH HHS R21 TR001743NIDDK NIH HHS U24 DK116214NIEHS NIH HHS K01 ES028047
6 · The paper itself

Abstract

The surge of public disease and drug-related data availability has facilitated the application of computational methodologies to transform drug discovery. In the current chapter, we outline and detail the various resources and tools one can leverage in order to perform such analyses. We further describe in depth the in silico workflows of two recent studies that have identified possible novel indications of existing drugs. Lastly, we delve into the caveats and considerations of this process to enable other researchers to perform rigorous computational drug discovery experiments of their own.

Indexed as

Big DataSoftwareBiological OntologiesComputational BiologyComputer SimulationDatabases, FactualDrug DiscoveryDrug RepositioningElectronic Health RecordsHumansPharmacogeneticsBig dataBioinformaticsClinical informaticsDrug discoveryDrug repositioningDrug repurposingElectronic medical recordsGene expression dataPharmacogenomicsSystems pharmacology

Identifiers

PMID30848458
PMCPMC6657335

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.