ArticleFrontiers in microbiology2019
Web-gLV: A Web Based Platform for Lotka-Volterra Based Modeling and Simulation of Microbial Populations.
Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- Increased nutrient diversity can induce loss of microbial diversity through enhanced resource uptake.Nature ecology & evolution · 2026Article
- Estimating Effective Pairwise Interactions to Predict the Structures of Microbial Communities (EPICS).Methods in molecular biology (Clifton, N.J.) · 2026Article
- Environment-mediated interactions cause an externalized and collective memory in bacteria.The ISME journal · 2025Article
- Modeling Microbial Community Networks: Methods and Tools for Studying Microbial Interactions.Microbial ecology · 2024Review
- Article
- Microbiome modeling: a beginner's guide.Frontiers in microbiology · 2024Review
- Methodological Considerations in Longitudinal Analyses of Microbiome Data: A Comprehensive Review.Genes · 2023Review
- Competition for nutrients increases invasion resistance during assembly of microbial communities.Molecular ecology · 2022Article
- Exploring changes in bacterioplankton community structure in response to tannic acid, a major component of mangrove litterfall of Sundarbans mangrove ecosystem: a laboratory mesocosm approach.Environmental science and pollution research international · 2022Article
- MiSDEED: a synthetic data engine for microbiome study power analysis and study design.Bioinformatics advances · 2022Article
- Exploring the Microbiome Analysis and Visualization Landscape.Frontiers in bioinformatics · 2021Review
- Network analysis methods for studying microbial communities: A mini review.Computational and structural biotechnology journal · 2021Review
- Experimental and computational approaches to unravel microbial community assembly.Computational and structural biotechnology journal · 2020Review
- Chemically Stressed Bacterial Communities in Anaerobic Digesters Exhibit Resilience and Ecological Flexibility.Frontiers in microbiology · 2020Article
- Metabolite-mediated modelling of microbial community dynamics captures emergent behaviour more effectively than species-species modelling.Journal of the Royal Society, Interface · 2019Article
- Visual exploration of microbiome data.Journal of biosciences · 2019Review
- Type 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era.Gut microbesReview
Corrections and comments
- Erratum issued
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microbial populations in various ecosystems. Mathematical modeling and simulation of such microbiome time series data can help in getting better understanding of bacterial communities. In this paper, we present Web-gLV-a GUI based interactive platform for generalized Lotka-Volterra (gLV) based modeling and simulation of microbial populations. The tool can be used to generate the mathematical models with automatic estimation of parameters and use them to predict future trajectories using numerical simulations. We also demonstrate the utility of our tool on few publicly available datasets. The case studies demonstrate the ease with which the current tool can be used by biologists to model bacterial populations and simulate their dynamics to get biological insights. We expect Web-gLV to be a valuable contribution in the field of ecological modeling and metagenomic systems biology.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.