Evidence map›Paper›PMID 30846797›Full record

ArticleScientific reports2019

Indole Pulse Signalling Regulates the Cytoplasmic pH of E. coli in a Memory-Like Manner.

Ashraf Zarkan, Santiago Caño-Muñiz, Jinbo Zhu, Kareem Al Nahas, Jehangir Cama, Ulrich F Keyser, David K Summers

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. A Ratiometric pH Sensor for Gram-Positive and Gram-Negative Bacteria.Journal of the American Chemical Society · 2026
    Article
  6. Indole signaling inGut microbes · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Bioenergetic suppression by redox-active metabolites promotes antibiotic tolerance inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Detection of Bioactive Metabolites inApplied spectroscopy · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ashraf ZarkanDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.ORCID 0000-0003-3582-124X
Santiago Caño-MuñizDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Jinbo ZhuThe Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE, UK.
Kareem Al NahasThe Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE, UK.ORCID 0000-0003-4568-5894
Jehangir CamaThe Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE, UK.ORCID 0000-0002-5982-1941
Ulrich F KeyserThe Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE, UK.ORCID 0000-0003-3188-5414
David K SummersDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK. dks11@cam.ac.uk.ORCID 0000-0002-8243-9521
University of Cambridge · GBMRC Laboratory of Molecular Biology · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F002912/1European Research Council 261101
6 · The paper itself

Abstract

Bacterial cells are critically dependent upon pH regulation. Here we demonstrate that indole plays a critical role in the regulation of the cytoplasmic pH of Escherichia coli. Indole is an aromatic molecule with diverse signalling roles. Two modes of indole signalling have been described: persistent and pulse signalling. The latter is illustrated by the brief but intense elevation of intracellular indole during stationary phase entry. We show that under conditions permitting indole production, cells maintain their cytoplasmic pH at 7.2. In contrast, under conditions where no indole is produced, the cytoplasmic pH is near 7.8. We demonstrate that pH regulation results from pulse, rather than persistent, indole signalling. Furthermore, we illustrate that the relevant property of indole in this context is its ability to conduct protons across the cytoplasmic membrane. Additionally, we show that the effect of the indole pulse that occurs normally during stationary phase entry in rich medium remains as a "memory" to maintain the cytoplasmic pH until entry into the next stationary phase. The indole-mediated reduction in cytoplasmic pH may explain why indole provides E. coli with a degree of protection against stresses, including some bactericidal antibiotics.

Indexed as

Cell MembraneCell ProliferationCulture MediaCytoplasmEscherichia coliFlow CytometryHydrogen-Ion ConcentrationIndolesPeriodicityPhosphatidylcholinesPhotonsSignal TransductionSpectrometry, FluorescenceUnilamellar Liposomes1-palmitoyl-2-oleoylphosphatidylcholineCulture MediaindoleIndolesPhosphatidylcholinesUnilamellar Liposomes

Identifiers

PMID30846797
PMCPMC6405993
OpenAlexW2891684316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.