Evidence map›Paper›PMID 30846483›Full record

ArticleThe Journal of cell biology2019

Cell cycle- and genomic distance-dependent dynamics of a discrete chromosomal region.

Hanhui Ma, Li-Chun Tu, Yu-Chieh Chung, Ardalan Naseri, David Grunwald, Shaojie Zhang, Thoru Pederson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 66 citations in OpenAlex.

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  14. Activity-driven chromatin organization during interphase: Compaction, segregation, and entanglement suppression.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
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  18. An Intermittent Cytochemist.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2023
    Article
  19. Nucleolar structure connects with global nuclear organization.bioRxiv : the preprint server for biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Hanhui MaDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA.
Li-Chun TuRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA.
Yu-Chieh ChungKavli Institute for the Physics and Mathematics of the Universe, University of Tokyo, Kashiwa, Japan.
Ardalan NaseriDepartment of Computer Science, University of Central Florida, Orlando, FL.ORCID 0000-0002-2747-2193
David GrunwaldRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA.ORCID 0000-0001-9067-804X
Shaojie ZhangDepartment of Computer Science, University of Central Florida, Orlando, FL.ORCID 0000-0002-4051-5549
Thoru PedersonDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA thoru.pederson@umassmed.edu.ORCID 0000-0002-3703-7806
University of Massachusetts Chan Medical School · USUniversity of Central Florida · USKavli Institute for the Physics and Mathematics of the Universe · JP

Funding

RNA Structural Motif Analysis Revisited: Towards a Systematic Understanding of Noncoding RNA as Modular BiomoleculesR01GM102515 · NIGMS · UNIVERSITY OF CENTRAL FLORIDA · PI ZHANG, SHAOJIE, ZHONG, CUNCONG · 2012 to 2025
$2.3M
Nucleolar Genomics During Early Mammalian DevelopmentU01DA040588 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KAUFMAN, PAUL D., PEDERSON, THORU · 2015 to 2019
$2.2M
Canonical and non-canonical nuclear HIV-RNA gene export in living cellsR01GM123541 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GRUNWALD, DAVID · 2016 to 2019
$1.3M
Visualizing local and global chromatin architecture, and gene expression in the individual cell by structural (SUSHI) and temporal (3D-SMRT) single molecule imagingU01DA047733 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GRUNWALD, DAVID · 2018 to 2019
$1.0M
Visualizing local and global chromatin architecture, and gene expression in the individual cell by structural (SUSHI) and temporal (3D-SMRT) single molecule imagingU01EB021238 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GRUNWALD, DAVID · 2015 to 2017
$990k
Deciphering real-time dynamics of the human genome organization in response to DNA damage and gene expressionR00GM126810 · NIGMS · OHIO STATE UNIVERSITY · PI TU, LI-CHUN · 2019 to 2021
$747k
Deciphering real-time dynamics of the human genome organization in response to DNA damage and gene expressionK99GM126810 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI TU, LI-CHUN · 2017 to 2018
$128k
NIBIB NIH HHS U01 EB021238NIDA NIH HHS U01 DA040588NIDA NIH HHS U01 DA047733NIGMS NIH HHS K99 GM126810NIGMS NIH HHS R00 GM126810NIGMS NIH HHS R01 GM102515NIGMS NIH HHS R01 GM123541
6 · The paper itself

Abstract

In contrast to the well-studied condensation and folding of chromosomes during mitosis, their dynamics during interphase are less understood. We deployed a CRISPR-based DNA imaging system to track the dynamics of genomic loci situated kilobases to megabases apart on a single chromosome. Two distinct modes of dynamics were resolved: local movements as well as ones that might reflect translational movements of the entire domain within the nucleoplasmic space. The magnitude of both of these modes of movements increased from early to late G1, whereas the translational movements were reduced in early S phase. The local fluctuations decreased slightly in early S and more markedly in mid-late S. These newly observed movements and their cell cycle dependence suggest the existence of a hitherto unrecognized compaction-relaxation dynamic of the interphase chromosome fiber, operating concurrently with changes in the extent of overall movements of loci in the 4D genome.

Indexed as

Genome, HumanBone NeoplasmsCell CycleCell NucleusChromosomes, HumanGenomicsHumansInterphaseMitosisOsteosarcomaTumor Cells, Cultured

Identifiers

PMID30846483
PMCPMC6504907
OpenAlexW2921947537

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.