Evidence map›Paper›PMID 30846446›Full record

ArticleDevelopment (Cambridge, England)2019

The KRAB-zinc-finger protein ZFP708 mediates epigenetic repression at RMER19B retrotransposons.

Michelle K Y Seah, Yaju Wang, Pierre-Alexis Goy, Hui Mun Loh, Wen Jun Peh, Diana H P Low, Brenda Y Han, Esther Wong, Ei Leen Leong, Gernot Wolf and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  7. Review
  8. The Ancient Origin and Function of Germline Cysts.Results and problems in cell differentiation · 2024
    Article
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  13. Review
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  17. Mouse Oocytes, A Complex Single Cell Transcriptome.Frontiers in cell and developmental biology · 2022
    Article
  18. Article
  19. Genome research · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Michelle K Y SeahDevelopmental Epigenetics and Disease Group, IMCB, A*STAR, 138673, Singapore.
Yaju WangDevelopmental Epigenetics and Disease Group, IMCB, A*STAR, 138673, Singapore.
Pierre-Alexis GoyMethyltransferases in Development and Disease Group, IMCB, A*STAR, 138673, Singapore.
Hui Mun LohDevelopmental Epigenetics and Disease Group, IMCB, A*STAR, 138673, Singapore.
Wen Jun PehDevelopmental Epigenetics and Disease Group, IMCB, A*STAR, 138673, Singapore.
Diana H P LowMethyltransferases in Development and Disease Group, IMCB, A*STAR, 138673, Singapore.
Brenda Y HanMethyltransferases in Development and Disease Group, IMCB, A*STAR, 138673, Singapore.
Esther WongKOre - Knock Out resource, IMB, A*STAR, 138648, Singapore.
Ei Leen LeongKOre - Knock Out resource, IMB, A*STAR, 138648, Singapore.
Gernot WolfThe Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892, USA.
Slim MzoughiMethyltransferases in Development and Disease Group, IMCB, A*STAR, 138673, Singapore.
Heike WollmannNGS Unit of DNA Sequencing Facility, IMCB, A*STAR, 138673, Singapore.
Todd S MacfarlanThe Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892, USA.
Ernesto GuccioneMethyltransferases in Development and Disease Group, IMCB, A*STAR, 138673, Singapore.
Daniel M MesserschmidtDevelopmental Epigenetics and Disease Group, IMCB, A*STAR, 138673, Singapore danielm@imcb.a-star.edu.sg.ORCID 0000-0003-2022-4696
Agency for Science, Technology and Research · SGEunice Kennedy Shriver National Institute of Child Health and Human Development · US

Funding

Mechanisms of Mammalian Epigenome ReprogrammingZIAHD008933 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MACFARLAN, TODD SCOTT · 2013 to 2025
$19.1M
6 · The paper itself

Abstract

Global epigenetic reprogramming is vital to purge germ cell-specific epigenetic features to establish the totipotent state of the embryo. This process transpires to be carefully regulated and is not an undirected, radical erasure of parental epigenomes. The TRIM28 complex has been shown to be crucial in embryonic epigenetic reprogramming by regionally opposing DNA demethylation to preserve vital parental information to be inherited from germline to soma. Yet the DNA-binding factors guiding this complex to specific targets are largely unknown. Here, we uncover and characterize a novel, maternally expressed, TRIM28-interacting KRAB zinc-finger protein: ZFP708. It recruits the repressive TRIM28 complex to RMER19B retrotransposons to evoke regional heterochromatin formation. ZFP708 binding to these hitherto unknown TRIM28 targets is DNA methylation and H3K9me3 independent. ZFP708 mutant mice are viable and fertile, yet embryos fail to inherit and maintain DNA methylation at ZFP708 target sites. This can result in activation of RMER19B-adjacent genes, while ectopic expression of ZFP708 results in transcriptional repression. Finally, we describe the evolutionary conservation of ZFP708 in mice and rats, which is linked to the conserved presence of the targeted RMER19B retrotransposons in these species.

Indexed as

Epigenetic RepressionZinc FingersAnimalsBase SequenceBinding SitesBlastocystDNA MethylationEmbryo, MammalianEvolution, MolecularMiceMice, KnockoutMouse Embryonic Stem CellsProtein BindingRatsRepressor ProteinsRetroelementsRepressor ProteinsRetroelementsTripartite Motif-Containing Protein 28Zfp708 protein, mouseDevelopmentDNA-methylationEpigeneticsInheritanceKRAB-ZFPMaternal effectReprogrammingTrim28/Kap1ZFP708

Identifiers

PMID30846446
PMCPMC6803371
OpenAlexW2922010753

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.