Evidence map›Paper›PMID 30845963›Full record

ArticleVirology journal2019

The glycoprotein, non-virion protein, and polymerase of viral hemorrhagic septicemia virus are not determinants of host-specific virulence in rainbow trout.

Shamila Yusuff, Gael Kurath, Min Sun Kim, Tarin M Tesfaye, Jie Li, Douglas G McKenney, Vikram N Vakharia

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
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  10. TheFrontiers in microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Shamila YusuffInstitute of Marine & Environmental Technology, University of Maryland Baltimore County, 701 E. Pratt Street, Baltimore, MD, 21202, USA.
Gael KurathU.S. Geological Survey, Western Fisheries Research Center, 6505 NE 65th Street, Seattle, WA, 98115, USA.
Min Sun KimU.S. Geological Survey, Western Fisheries Research Center, 6505 NE 65th Street, Seattle, WA, 98115, USA.
Tarin M TesfayeU.S. Geological Survey, Western Fisheries Research Center, 6505 NE 65th Street, Seattle, WA, 98115, USA.
Jie LiInstitute of Marine & Environmental Technology, University of Maryland Baltimore County, 701 E. Pratt Street, Baltimore, MD, 21202, USA.
Douglas G McKenneyU.S. Geological Survey, Western Fisheries Research Center, 6505 NE 65th Street, Seattle, WA, 98115, USA.
Vikram N VakhariaInstitute of Marine & Environmental Technology, University of Maryland Baltimore County, 701 E. Pratt Street, Baltimore, MD, 21202, USA. vakharia@umbc.edu.ORCID 0000-0002-0955-3010
United States Geological Survey · USUniversity of Maryland, Baltimore County · USGenVec · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundViral hemorrhagic septicemia virus (VHSV), a fish rhabdovirus belonging to the Novirhabdovirus genus, causes severe disease and mortality in many marine and freshwater fish species worldwide. VHSV isolates are classified into four genotypes and each group is endemic to specific geographic regions in the north Atlantic and Pacific Oceans. Most viruses in the European VHSV genotype Ia are highly virulent for rainbow trout (Oncorhynchus mykiss), whereas, VHSV genotype IVb viruses from the Great Lakes region in the United States, which caused high mortality in wild freshwater fish species, are avirulent for trout. This study describes molecular characterization and construction of an infectious clone of the virulent VHSV-Ia strain DK-3592B from Denmark, and application of the clone in reverse genetics to investigate the role of selected VHSV protein(s) in host-specific virulence in rainbow trout (referred to as trout-virulence).

methodsOverlapping cDNA fragments of the DK-3592B genome were cloned after RT-PCR amplification, and their DNA sequenced by the di-deoxy chain termination method. A full-length cDNA copy (pVHSVdk) of the DK-3592B strain genome was constructed by assembling six overlapping cDNA fragments by using natural or artificially created unique restriction sites in the overlapping regions of the clones. Using an existing clone of the trout-avirulent VHSV-IVb strain MI03 (pVHSVmi), eight chimeric VHSV clones were constructed in which the coding region(s) of the glycoprotein (G), non-virion protein (NV), G and NV, or G, NV and L (polymerase) genes together, were exchanged between the two clones. Ten recombinant VHSVs (rVHSVs) were generated, including two parental rVHSVs, by transfecting fish cells with ten individual full-length plasmid constructs along with supporting plasmids using the established protocol. Recovered rVHSVs were characterized for viability and growth in vitro and used to challenge groups of juvenile rainbow trout by intraperitoneal injection.

resultsComplete sequence of the VHSV DK-3592B genome was determined from the cloned cDNA and deposited in GenBank under the accession no. KC778774. The trout-virulent DK-3592B genome (genotype Ia) is 11,159 nt in length and differs from the trout-avirulent MI03 genome (pVHSVmi) by 13% at the nucleotide level. When the rVHSVs were assessed for the trout-virulence phenotype in vivo, the parental rVHSVdk and rVHSVmi were virulent and avirulent, respectively, as expected. Four chimeric rVHSVdk viruses with the substitutions of the G, NV, G and NV, or G, NV and L genes from the avirulent pVHSVmi constructs were still highly virulent (100% mortality), while the reciprocal four chimeric rVHSVmi viruses with genes from pVHSVdk remained avirulent (0-10% mortality).

conclusionsWhen chimeric rVHSVs, containing all the G, NV, and L gene substitutions, were tested in vivo, they did not exhibit any change in trout-virulence relative to the background clones. These results demonstrate that the G, NV and L genes of VHSV are not, by themselves or in combination, major determinants of host-specific virulence in trout.

Indexed as

AnimalsCloning, MolecularDNA, ComplementaryDNA-Directed RNA PolymerasesGenome, ViralGenotypeGlycoproteinsHemorrhagic Septicemia, ViralHost SpecificityNovirhabdovirusOncorhynchus mykissPhenotypeReverse GeneticsVirulenceDNA, ComplementaryDNA-Directed RNA PolymerasesGlycoproteinsFishGlycoproteinNon-virion proteinPolymerase proteinRhabdovirusVHSVVirulence determinant

Identifiers

PMID30845963
PMCPMC6407216
OpenAlexW2940638074

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.