Evidence map›Paper›PMID 30845957›Full record

ArticleGenome biology2019

I-Boost: an integrative boosting approach for predicting survival time with multiple genomics platforms.

Kin Yau Wong, Cheng Fan, Maki Tanioka, Joel S Parker, Andrew B Nobel, Donglin Zeng, Dan-Yu Lin, Charles M Perou

Abstract read
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Trial
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kin Yau WongDepartment of Applied Mathematics, The Hong Kong Polytechnic University, Hung Hom, Hong Kong.
Cheng FanLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA.
Maki TaniokaLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA.
Joel S ParkerLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA.
Andrew B NobelLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA.
Donglin ZengLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA.
Dan-Yu LinLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA. lin@bios.unc.edu.
Charles M PerouLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27599, NC, USA. chuck_perou@med.unc.edu.ORCID 0000-0001-9827-2247

Funding

Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Statistical Methods for Cancer Clinical TrialsP01CA142538 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIDIAN, MARIE, KOSOROK, MICHAEL R · 2010 to 2019
$21.3M
Therapeutic Targeting of Breast Cancer Tumor Initiating CellsR01CA148761 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PEROU, CHARLES M, ROSEN, JEFFREY MARK · 2010 to 2025
$6.5M
Semiparametric Regression Analysis of Censored DataR01GM047845 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIN, DANYU · 1997 to 2018
$2.9M
Statistical Methods in Trans-Omics Chronic Disease ResearchR01HG009974 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIN, DANYU · 2018 to 2022
$1.5M
Multi-tissue and network models for next-generation EQTL studiesR01HG009125 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NOBEL, ANDREW B, WRIGHT, FRED A. · 2016 to 2018
$1.1M
NCI NIH HHS P01 CA142538NCI NIH HHS P01CA142538NCI NIH HHS P50 CA058223NCI NIH HHS P50-CA58223-09A1NCI NIH HHS R01 CA148761NCI NIH HHS R01CA148761NHGRI NIH HHS R01 HG009125NHGRI NIH HHS R01 HG009974NHGRI NIH HHS R01HG009974NIEHS NIH HHS P30 ES010126NIGMS NIH HHS R01 GM047845NIGMS NIH HHS R01GM047845
6 · The paper itself

Abstract

We propose a statistical boosting method, termed I-Boost, to integrate multiple types of high-dimensional genomics data with clinical data for predicting survival time. I-Boost provides substantially higher prediction accuracy than existing methods. By applying I-Boost to The Cancer Genome Atlas, we show that the integration of multiple genomics platforms with clinical variables improves the prediction of survival time over the use of clinical variables alone; gene expression values are typically more prognostic of survival time than other genomics data types; and gene modules/signatures are at least as prognostic as the collection of individual gene expression data.

Indexed as

Gene Expression Regulation, NeoplasticGene Regulatory NetworksSoftwareGene Expression ProfilingGenomicsHumansModels, StatisticalNeoplasmsPrognosisSurvival RateCancer genomicsData integrationGene modulesVariable selection

Identifiers

PMID30845957
PMCPMC6404283

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.