Evidence map›Paper›PMID 30845655›Full record

ArticleNanomaterials (Basel, Switzerland)2019

Optimization of the Split-Spinach Aptamer for Monitoring Nanoparticle Assembly Involving Multiple Contiguous RNAs.

Jack M O'Hara, Dylan Marashi, Sean Morton, Luc Jaeger, Wade W Grabow

Abstract read
In one paragraph

Article in Nanomaterials (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jack M O'HaraDepartment of Chemistry and Biochemistry, Seattle Pacific University, Seattle, WA 918119-1997, USA. oharaj@spu.edu.
Dylan MarashiDepartment of Chemistry and Biochemistry, Seattle Pacific University, Seattle, WA 918119-1997, USA. marashid@spu.edu.
Sean MortonDepartment of Chemistry and Biochemistry, Seattle Pacific University, Seattle, WA 918119-1997, USA. mortons@spu.edu.
Luc JaegerDepartment of Chemistry and Biochemistry, Biomolecular Science and Engineering Program, University of California, Santa Barbara, CA 93106-9510, USA. jaeger@ucsb.edu.ORCID 0000-0001-9068-348X
Wade W GrabowDepartment of Chemistry and Biochemistry, Seattle Pacific University, Seattle, WA 918119-1997, USA. grabow@spu.edu.ORCID 0000-0002-0030-0797

Funding

M.J. Murdock Charitable Trust 2014278:MNL:2/26/2015
6 · The paper itself

Abstract

The fact that structural RNA motifs can direct RNAs to fold and self-assemble into predictable pre-defined structures is an attractive quality and driving force for RNA's use in nanotechnology. RNA's recognized diversity concerning cellular and synthetically selected functionalities, however, help explain why it continues to draw attention for new nano-applications. Herein, we report the modification of a bifurcated reporter system based on the previously documented Spinach aptamer/DFHBI fluorophore pair that affords the ability to confirm the assembly of contiguous RNA strands within the context of the previously reported multi-stranded RNA nanoring. Exploration of the sequence space associated with the base pairs flanking the aptamer core demonstrate that fluorescent feedback can be optimized to minimize the fluorescence associated with partially-assembled RNA nanorings. Finally, we demonstrate that the aptamer-integrated nanoring is capable of assembling directly from transcribed DNA in one pot.

Indexed as

light-up aptamerRNA nanoparticleRNA nanotechnologyRNA self-assembly

Identifiers

PMID30845655
PMCPMC6474029

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.