Evidence map›Paper›PMID 30844257›Full record

ArticleAnalytical chemistry2019

Characterization of Antigenic Oligosaccharides from Gram-Negative Bacteria via Activated Electron Photodetachment Mass Spectrometry.

Christopher M Crittenden, Edwin E Escobar, Peggy E Williams, James D Sanders, Jennifer S Brodbelt

Abstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Christopher M CrittendenDepartment of Chemistry , University of Texas at Austin , Austin , Texas 78712 , United States.
Edwin E EscobarDepartment of Chemistry , University of Texas at Austin , Austin , Texas 78712 , United States.
Peggy E WilliamsDepartment of Chemistry , University of Texas at Austin , Austin , Texas 78712 , United States.
James D SandersDepartment of Chemistry , University of Texas at Austin , Austin , Texas 78712 , United States.
Jennifer S BrodbeltDepartment of Chemistry , University of Texas at Austin , Austin , Texas 78712 , United States.ORCID 0000-0003-3207-0217
The University of Texas at Austin · US

Funding

UVPD-MS Characterization of LipopolysaccharidesR01GM103655 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S. · 2012 to 2019
$2.3M
IRACDA Postdoctoral Program: Collaborative Opportunities for Research EducatorsK12GM102745 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S. · 2013 to 2017
$2.2M
NIGMS NIH HHS K12 GM102745NIGMS NIH HHS R01 GM103655
6 · The paper itself

Abstract

Lipooligosaccharides (LOS), composed of hydrophilic oligosaccharides and hydrophobic lipid A domains, are found on the outer membranes of Gram-negative bacteria. Here we report the characterization of deacylated LOS of LPS by activated-electron photodetachment mass spectrometry. Collision induced dissociation (CID) of these phosphorylated oligosaccharides produces simple MS/MS spectra with most fragment ions arising from cleavages near the reducing end of the molecule where the phosphate groups are located. In contrast, 193 nm ultraviolet photodissociation (UVPD) generates a wide array of product ions throughout the oligosaccharide including cross-ring fragments that illuminate the branching patterns. However, there are also product ions that are redundant or uninformative, resulting in more congested spectra that complicate interpretation. In this work, a hybrid UVPD-CID approach known as activated-electron photodetachment (a-EPD) affords less congested spectra than UVPD alone and richer fragmentation patterns than CID alone. a-EPD combines UVPD of negatively charged oligosaccharides to yield abundant charge-reduced radical ions which are subsequently interrogated by collisional activation. CID of the charge-reduced precursors results in extensive fragmentation throughout the backbone of the oligosaccharide. This hybridized a-EPD approach was employed to characterize the structure and branching pattern of deacylated LOS of E. coli.

Indexed as

AntigensElectronsEscherichia coliLipopolysaccharidesSpectrometry, Mass, Electrospray IonizationAntigenslipid-linked oligosaccharidesLipopolysaccharides

Identifiers

PMID30844257
PMCPMC6620780
OpenAlexW2920808611

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.