Evidence map›Paper›PMID 30843665›Full record

ArticleCancer medicine2019

Functional polymorphisms in circadian positive feedback loop genes predict postsurgical prognosis of gastric cancer.

Yibing Chen, Dandan Wang, Yucen Song, Xiaofei Zhang, Zhihui Jiao, Juqin Dong, Lin Lü, Zhengzhi Zou, Wei Du, Falin Qu

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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  10. Circadian Gene Polymorphisms Associated with Breast Cancer Susceptibility.International journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Yibing ChenGenetic and Prenatal Diagnosis Center, First Affiliated Hospital, Zhengzhou University, Zhengzhou, China.ORCID 0000-0002-9117-3614
Dandan WangShandong Medicinal Biotechnology Centre, Key Laboratory for Rare & Uncommon Diseases of Shandong Province, Back and Neck Pain Hospital, Shandong Academy of Medical Sciences, Jinan, China.
Yucen SongGenetic and Prenatal Diagnosis Center, First Affiliated Hospital, Zhengzhou University, Zhengzhou, China.
Xiaofei ZhangDepartment of Medical Oncology, First Affiliated Hospital, Zhengzhou University, Zhengzhou, China.
Zhihui JiaoGenetic and Prenatal Diagnosis Center, First Affiliated Hospital, Zhengzhou University, Zhengzhou, China.
Juqin DongCell-Gene Therapy Translational Medicine Research Center, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China.
Lin LüDepartment of Medical Oncology, Guangzhou First People's Hospital, Guangzhou Medical University, Guangzhou, China.
Zhengzhi ZouMOE Key Laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou, China.
Wei DuDepartment of Neurosurgery, First Affiliated Hospital, Zhengzhou University, Zhengzhou, China.ORCID 0000-0001-8271-6704
Falin QuDepartment of General Surgery, Tangdu Hospital, Fourth Military Medical University, Xi'an, China.
First Affiliated Hospital of Zhengzhou University · CN82th Hospital of Pla · CNSecond Affiliated Hospital of Guangzhou Medical University · CNShandong First Medical University · CNSouth China Normal University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCircadian positive feedback loop (CPFL) genes (CLOCK, BAML1, and NPAS2) have been implicated in cancer initiation and progression. The purpose of this study was to explore the effects of single-nucleotide polymorphisms (SNPs) in CPFL genes on prognosis of gastric cancer (GC) patients.

methodsNine functional SNPs from the three CPFL genes were genotyped in a cohort of 704 GC patients undergoing resection. Multivariate Cox regression model and Kaplan-Meier curve were used for prognosis analysis.

resultsAmong the nine SNPs, rs11133399 in CLOCK, rs1044432 and rs2279284 in BAML1 were significantly associated with GC overall survival and recurrence-free survival. The unfavorable genotypes of these SNPs showed a cumulative effect on GC prognosis. Multivariate assessment model indicated that these SNPs, in conjunction with clinical variables, enhanced the power to predict GC prognosis. In addition, survival tree analysis revealed the genotype of rs11133399 as a primary risk factor contributing to the prognosis of GC patients. Functional assays showed that the G allele in rs11133399 significantly enhanced luciferase reporter activity than A allele. Immunohistochemical analysis further demonstrated that the genotype of rs11133399 was significantly associated with the expression level of CLOCK in GC tissues, suggesting that this SNP might affect the prognosis of GC through its influence on the expression of CLOCK gene.

conclusionsOur data indicate that SNPs in CPFL genes might contribute to the clinical outcome of GC through their impact on gene expression. Further studies are needed to elucidate its underlying molecular mechanisms.

Indexed as

Polymorphism, Single NucleotideAgedARNTL Transcription FactorsBasic Helix-Loop-Helix ProteinsChinaCircadian ClocksCircadian Rhythm Signaling Peptides and ProteinsCLOCK ProteinsEpistasis, GeneticFemaleGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseGenotypeHumansKaplan-Meier EstimateMaleARNTL Transcription FactorsBasic Helix-Loop-Helix ProteinsBMAL1 protein, humanCircadian Rhythm Signaling Peptides and ProteinsCLOCK protein, humanCLOCK ProteinsNerve Tissue ProteinsNPAS2 protein, humancircadian genegastric cancerprognosissingle-nucleotide polymorphism

Identifiers

PMID30843665
PMCPMC6488121
OpenAlexW2922131018

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.