ArticleMolecular biology reports2019
Genome-wide identification of CAMTA gene family members in Phaseolus vulgaris L. and their expression profiling during salt stress.
Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Genome-Wide Identification and Characterization of the Calmodulin-Binding Transcription Activators (CAMTA) Gene Family inPlants (Basel, Switzerland) · 2026Article
- Cis-regulatory elements in CAMTA-mediated stress signalling: mechanisms and prospects for CRISPR-based crop improvement.Frontiers in plant science · 2026Review
- Calmodulin-Binding Transcription Factors: Roles in Plant Response to Abiotic Stresses.Plants (Basel, Switzerland) · 2025Review
- Functional characterization of FvCAMTA1in salt stress response ofFrontiers in plant science · 2025Article
- Article
- Genome-Wide Identification and Expression Analysis of thePlants (Basel, Switzerland) · 2024Article
- Genome-wide identification of CAMTA genes and their expression dependence on light and calcium signaling during seedling growth and development in mung bean.BMC genomics · 2024Article
- Maize miRNAs and their putative target genes involved in chilling stress response in 5-day old seedlings.BMC genomics · 2024Article
- Genome-Wide Identification and Characterization of the GRAS Gene Family in Lettuce Revealed That SilencingPlants (Basel, Switzerland) · 2024Article
- OsCAMTA3 Negatively Regulates Disease Resistance toInternational journal of molecular sciences · 2024Article
- Identification and Molecular Characterization of the CAMTA Gene Family in Solanaceae with a Focus on the Expression Analysis of Eggplant Genes under Cold Stress.International journal of molecular sciences · 2024Article
- Identification of CAMTA Gene Family inPlants (Basel, Switzerland) · 2022Article
- Review
- Genome-Wide Identification and Characterization of the Calmodulin-Binding Transcription Activator (CAMTA) Gene Family in Plants and the Expression Pattern Analysis ofInternational journal of molecular sciences · 2022Article
- Systematic Analysis and Identification of Drought-Responsive Genes of theInternational journal of molecular sciences · 2022Article
- Identification and Characterization of SRS Genes in Phaseolus vulgaris Genome and Their Responses Under Salt Stress.Biochemical genetics · 2022Article
- Comparative time-course transcriptome analysis of two contrasting alfalfa (Frontiers in plant science · 2022Article
- Identification and Expression Analysis ofFrontiers in plant science · 2022Article
- Comprehensive genome-wide analysis of calmodulin-binding transcription activator (CAMTA) in Durio zibethinus and identification of fruit ripening-associated DzCAMTAs.BMC genomics · 2021Article
- Genome-Wide Characterization and Expression Analysis ofFrontiers in genetics · 2021Article
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5 authors.
Funding
Abstract
The calmodulin-binding transcriptional activator (CAMTA) family was first observed in tobacco (NtER1) during a screening for the CaM-binding proteins, which are known to be one of the fast response stress proteins. Due to the increased importance of plant transcription factors in recent years; genome-wide identification of CAMTA genes has been performed in several plant species, except for Phaseolus vulgaris. Therefore, our aim was to identify and characterize CAMTA genes in P. vulgaris via in silico genome-wide analysis approach. Our results showed a total of eight CAMTA genes that were identified and observed on five out of 11 chromosomes of P. vulgaris. Four gene couples were found to be segmentally-duplicated and these segmental duplication events were shown to occur from 29.97 to 92.06 MYA. The phylogenetic tree of CAMTA homologs from P. vulgaris, A. thaliana, and G. max. revealed three groups based on their homology and the intron numbers of Pvul-CAMTA genes, ranged from 11 to 12. According to the syteny analysis; CAMTA genes of P. vulgaris and G. max revealed higher similarity, because they have highly similar genomes compared to A. thaliana. All Pvul-CAMTA genes were targeted by miRNAs, which play a role in response mechanism of salt stress. To detect expression levels in different plant tissues, mRNA analysis of Pvul-CAMTA genes were performed using publicly available expression data in Phytozome v12.1. In addition, responses of Pvul-CAMTA genes to salt stress, were also examined via both RNAseq and qRT-PCR analysis. To identify and to obtain insight into biological functions of CAMTA genes in the genome of P. vulgaris, several analyses were conducted using many online and offline bioinformatic tools, genome databases and qRT-PCR analyses. Due to this study being the first in the identification of CAMTA genes in P. vulgaris, this study could be considered as an useful source for future CAMTA genes studies in either P. vulgaris or comparative different plant species.
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