Evidence map›Paper›PMID 30842571›Full record

ArticleScientific reports2019

A basic Helix-Loop-Helix (SlARANCIO), identified from a Solanum pennellii introgression line, affects carotenoid accumulation in tomato fruits.

Vincenzo D'Amelia, Assunta Raiola, Domenico Carputo, Edgardo Filippone, Amalia Barone, Maria Manuela Rigano

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Overexpression ofFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Vincenzo D'AmeliaDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Italy.ORCID 0000-0002-8548-6825
Assunta RaiolaDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Italy.
Domenico CarputoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Italy.
Edgardo FilipponeDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Italy.
Amalia BaroneDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Italy.
Maria Manuela RiganoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Italy. mrigano@unina.it.
Federico II University Hospital · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carotenoid accumulation in tomato (Solanum lycopersicum) fruits is influenced by environmental stimuli and hormonal signals. However, information on the relative regulatory mechanisms are scanty since many molecular players of the carotenoid biosynthetic pathway are still unknown. Here, we reported a basic Helix-Loop-Helix transcription factor, named SlARANCIO (SlAR), whose silencing influences carotenoid accumulation in tomato fruits. The SlAR gene was found in the S. pennellii introgression line (IL) 12-4SL that holds the carotenoid QTL lyc12.1. We observed that the presence of the wild region in a cultivated genetic background led to a decrease in total carotenoid content of IL12-4SL fruits. To get insights into the function of SlAR, a quick reverse genetic approach was carried out. Virus-induced gene silencing of SlAR in S. lycopersicum M82 and MicroTom fruits reproduced the same phenotype observed in IL12-4SL, i.e. decreased content of lycopene and total carotenoids. Vice versa, the overexpression of SlAR in Nicotiana benthamiana leaves increased the content of total carotenoids and chlorophylls. Our results, combined with public transcriptomic data, highly suggest that SlAR acts indirectly on the carotenoid pathway and advances current knowledge on the molecular regulators controlling lyc12.1 and, potentially, precursors of carotenoid biosynthesis.

Indexed as

Basic Helix-Loop-Helix ProteinsBiosynthetic PathwaysCarotenoidsChlorophyllFruitGene Expression Regulation, PlantLycopenePhenotypePlant LeavesPlant ProteinsPlants, Genetically ModifiedSolanumSolanum lycopersicumTranscriptomeBasic Helix-Loop-Helix ProteinsCarotenoidsChlorophyllLycopenePlant Proteins

Identifiers

PMID30842571
PMCPMC6403429
OpenAlexW2919290283

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.