Evidence map›Paper›PMID 30842553›Full record

ArticleScientific reports2019

Synchrony and asynchrony between an epigenetic clock and developmental timing.

Akina Hoshino, Steve Horvath, Akshayalakshmi Sridhar, Alex Chitsazan, Thomas A Reh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Premature Ovarian Insufficiency.Current opinion in endocrine and metabolic research · 2023
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  11. Review
  12. Article
  13. Review
  14. The Ground Zero of Organismal Life and Aging.Trends in molecular medicine · 2021
    Review
  15. Panomics: New Databases for Advancing Cardiology.Frontiers in cardiovascular medicine · 2021
    Review
  16. Retinal organoids: a window into human retinal development.Development (Cambridge, England) · 2020
    Review
  17. Article
  18. Analysis of epigenetic agingExperimental biology and medicine (Maywood, N.J.) · 2020
    Review
  19. Current perspectives on the cellular and molecular features of epigenetic ageing.Experimental biology and medicine (Maywood, N.J.) · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Akina HoshinoDepartment of Biological Structure, University of Washington, Seattle, WA, 98195, USA.
Steve HorvathHuman Genetics and Biostatistics, David Geffen School of Medicine, University of California Los Angeles, Gonda Research Center, Los Angeles, CA, 90095-7088, USA.
Akshayalakshmi SridharDepartment of Biological Structure, University of Washington, Seattle, WA, 98195, USA.
Alex ChitsazanDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
Thomas A RehDepartment of Biological Structure, University of Washington, Seattle, WA, 98195, USA. tomreh@uw.edu.
University of Washington · USUniversity of California, Los Angeles · US

Funding

Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 1985 to 2026
$23.5M
Supplement to EY021482 to carry out a screen for retinal regeneration using CRISPR-Cas9 gene activation.R01EY021482 · NEI · UNIVERSITY OF WASHINGTON · PI THOMAS A REH · 2011 to 2026
$6.3M
Validation and optimization of epigenetic clocksU01AG060908 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RITZ, BEATE R. · 2018 to 2022
$3.4M
miRNAs in embryonic stem cells during retinal differentiationF32EY025117 · NEI · UNIVERSITY OF WASHINGTON · PI HOSHINO, AKINA · 2015 to 2017
$179k
NEI NIH HHS F32 EY025117NEI NIH HHS P30 EY001730NEI NIH HHS R01 EY021482NIA NIH HHS U01 AG060908
6 · The paper itself

Abstract

Epigenetic changes have been used to estimate chronological age across the lifespan, and some studies suggest that epigenetic "aging" clocks may already operate in developing tissue. To better understand the relationship between developmental stage and epigenetic age, we utilized the highly regular sequence of development found in the mammalian neural retina and a well-established epigenetic aging clock based on DNA methylation. Our results demonstrate that the epigenetic age of fetal retina is highly correlated with chronological age. We further establish that epigenetic aging progresses normally in vitro, suggesting that epigenetic aging is a property of individual tissues. This correlation is also retained in stem cell-derived retinal organoids, but is accelerated in individuals with Down syndrome, a progeroid-like condition. Overall, our results suggest that epigenetic aging begins as early as a few weeks post-conception, in fetal tissues, and the mechanisms underlying the phenomenon of epigenetic aging might be studied in developing organs.

Indexed as

DNA MethylationCells, CulturedCellular SenescenceCpG IslandsEpigenesis, GeneticHumansOrganoidsRetinaSequence Analysis, RNA

Identifiers

PMID30842553
PMCPMC6403397
OpenAlexW2919418800

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.