Evidence map›Paper›PMID 30842518›Full record

ArticleScientific reports2019

Transcriptome analysis of beta-lactamase genes in diarrheagenic Escherichia coli.

Taru Singh, Praveen Kumar Singh, Shukla Das, Sayim Wani, Arshad Jawed, Sajad Ahmad Dar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Computational Evaluation ofCurrent computer-aided drug design · 2026
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  7. Antibiotic resistance, virulence gene, phylogenetic group and genetic diversity ofFrontiers in cellular and infection microbiology · 2025
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  8. Article
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  10. Review
  11. Article
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  13. Article
  14. Molecular detection of blaAnnals of clinical microbiology and antimicrobials · 2021
    Article
  15. Article
  16. Article
  17. International journal of microbiology · 2021
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Taru SinghDepartment of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, India.
Praveen Kumar SinghDepartment of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, India.
Shukla DasDepartment of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, India. shukladas_123@yahoo.com.
Sayim WaniDepartment of Minimal Access and Bariatric Surgery, Fortis Flt. Rajan Dhall Hospital, New Delhi, India.
Arshad JawedResearch and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan, Saudi Arabia.
Sajad Ahmad DarDepartment of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, India.
Guru Teg Bahadur Hospital · INFortis Flt. Lt. Rajan Dhall Hospital · INJazan University · SAUniversity of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beta (β)-lactamases are the most important agents that confer drug resistance among gram-negative bacteria. Continuous mutations in β-lactamases make them remarkably diverse. We carried out the transcriptome analysis of 10 β-lactamase genes of Extended-Spectrum β-lactamases (ESBL), Metallo β-lactamases (MBL), and AmpC β-lactamases (ABL) in drug-resistant and sensitive diarrheagenic E. coli (DEC) isolates obtained from children up to 5 years of age. Out of the 10 β-lactamase genes, four belonged to ESBL (TEM, SHV, CTX, and OXA); three to MBL (NDM-1, IMP, and VIM); and three to ABL (ACT, DHA and CMY) class of genes. The different categories of DEC were estimated for β-lactamases production using a set of conventional phenotypic tests, followed by detection of their messenger RNA (mRNA) expression. The study revealed a direct correlation between mRNA expression of these genes and the presence of antibiotic resistance; also corroborated by mutation analysis of the AmpC promoter region. All the 10 β-lactamase genes showed a significant increase in their expression levels in resistant isolates, compared to those of the sensitive isolates, indicating their possible role in the disease pathogenesis. Increase in mRNA expression of β-lactamase genes, and thereby virulence, may be due to multifactorial parameters causing phenotypic as well as genotypic changes. Our study highlights the necessity of instantaneous detection of β-lactamase gene expression to curb the overwhelming threat posed by emergence of drug resistance amongst the commensal E. coli strains in children from developing countries for larger public health interest.

Indexed as

TranscriptomeAnti-Bacterial Agentsbeta-LactamasesChild, PreschoolDiarrheaDrug Resistance, MicrobialEscherichia coliEscherichia coli InfectionsGene Expression ProfilingHumansInfantInfant, NewbornAnti-Bacterial Agentsbeta-Lactamases

Identifiers

PMID30842518
PMCPMC6403342
OpenAlexW2919975612

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.