Evidence map›Paper›PMID 30842281›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

TIM-mediated inhibition of HIV-1 release is antagonized by Nef but potentiated by SERINC proteins.

Minghua Li, Abdul A Waheed, Jingyou Yu, Cong Zeng, Hui-Yu Chen, Yi-Min Zheng, Amin Feizpour, Björn M Reinhard, Suryaram Gummuluru, Steven Lin and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. IFN-inducible human phospholipid scramblase 1 (PLSCR1) protein restricts HIV-1 infection by inhibiting membrane fusion.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. SERINC4 is dispensable for male fertility and spermatogenesis in mice.American journal of translational research · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. SERINC5 counters retroviruses and non-retroviruses.Frontiers in cellular and infection microbiology · 2024
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. CoelacanthJournal of virology · 2021
    Article
  17. SARS-CoV-2 Spreads through Cell-to-Cell Transmission.bioRxiv : the preprint server for biology · 2021
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Minghua LiCenter for Retrovirus Research, The Ohio State University, Columbus, OH 43210.
Abdul A WaheedVirus-Cell Interaction Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, MD 21702.
Jingyou YuCenter for Retrovirus Research, The Ohio State University, Columbus, OH 43210.
Cong ZengCenter for Retrovirus Research, The Ohio State University, Columbus, OH 43210.
Hui-Yu ChenInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Yi-Min ZhengCenter for Retrovirus Research, The Ohio State University, Columbus, OH 43210.
Amin FeizpourDepartment of Chemistry and The Photonics Center, Boston University, Boston, MA 02215.
Björn M ReinhardDepartment of Chemistry and The Photonics Center, Boston University, Boston, MA 02215.
Suryaram GummuluruDepartment of Microbiology, Boston University School of Medicine, Boston, MA 02118.ORCID 0000-0002-8606-8481
Steven LinInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Eric O FreedVirus-Cell Interaction Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, MD 21702.
Shan-Lu LiuCenter for Retrovirus Research, The Ohio State University, Columbus, OH 43210; liu.6244@osu.edu.
The Ohio State University · USBoston University · USInstitute of Biological Chemistry, Academia Sinica · TWNational Cancer Institute · US

Funding

Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI CURT G BECKWITH · 1998 to 2026
$51.7M
HIV-1 Gag Assembly and MaturationZIABC011720 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI FREED, ERIC · 2016 to 2025
$7.2M
Mechanism of cell-associated HIV-1 transmissionR01AI064099 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GUMMULURU, SURYARAM · 2005 to 2020
$5.9M
Illuminating Dynamic Receptor Clustering in the Epidermal Growth Factor Receptor Signal Transduction Pathway Using Plasmon CouplingR01CA138509 · NCI · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI Bjoern Markus Reinhard · 2009 to 2026
$5.9M
GM3 Nanoparticles for Sustained Delivery of Anti-Retrovirals to Lymphatic TissuesR01AI132111 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GUMMULURU, SURYARAM, REINHARD, BJOERN MARKUS · 2018 to 2022
$2.7M
IFITM-mediated Inhibition of HIV Infection and Viral CountermeasuresR01AI112381 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI LIU, SHAN-LU · 2014 to 2018
$1.7M
TIM-mediated Inhibition of HIV Release: Cooperation with SERINC and Antagonism by NefR01AI150473 · NIAID · OHIO STATE UNIVERSITY · PI LIU, SHAN-LU · 2019 to 2021
$995k
TIM-mediated Inhibition of HIV Release: Cooperation with SERINC and Antagonism by NefR01GM132069 · NIGMS · OHIO STATE UNIVERSITY · PI LIU, SHAN-LU · 2018 to 2018
$332k
NCI NIH HHS R01 CA138509NIAID NIH HHS P30 AI042853NIAID NIH HHS R01 AI064099NIAID NIH HHS R01 AI112381NIAID NIH HHS R01 AI132111NIAID NIH HHS R01 AI150473NIGMS NIH HHS R01 GM132069
6 · The paper itself

Abstract

The T cell Ig and mucin domain (TIM) proteins inhibit release of HIV-1 and other enveloped viruses by interacting with cell- and virion-associated phosphatidylserine (PS). Here, we show that the Nef proteins of HIV-1 and other lentiviruses antagonize TIM-mediated restriction. TIM-1 more potently inhibits the release of Nef-deficient relative to Nef-expressing HIV-1, and ectopic expression of Nef relieves restriction. HIV-1 Nef does not down-regulate the overall level of TIM-1 expression, but promotes its internalization from the plasma membrane and sequesters its expression in intracellular compartments. Notably, Nef mutants defective in modulating membrane protein endocytic trafficking are incapable of antagonizing TIM-mediated inhibition of HIV-1 release. Intriguingly, depletion of SERINC3 or SERINC5 proteins in human peripheral blood mononuclear cells (PBMCs) attenuates TIM-1 restriction of HIV-1 release, in particular that of Nef-deficient viruses. In contrast, coexpression of SERINC3 or SERINC5 increases the expression of TIM-1 on the plasma membrane and potentiates TIM-mediated inhibition of HIV-1 production. Pulse-chase metabolic labeling reveals that the half-life of TIM-1 is extended by SERINC5 from <2 to ∼6 hours, suggesting that SERINC5 stabilizes the expression of TIM-1. Consistent with a role for SERINC protein in potentiating TIM-1 restriction, we find that MLV glycoGag and EIAV S2 proteins, which, like Nef, antagonize SERINC-mediated diminishment of HIV-1 infectivity, also effectively counteract TIM-mediated inhibition of HIV-1 release. Collectively, our work reveals a role of Nef in antagonizing TIM-1 and highlights the complex interplay between Nef and HIV-1 restriction by TIMs and SERINCs.

Indexed as

Cell MembraneDown-RegulationHEK293 CellsHepatitis A Virus Cellular Receptor 1HIV-1HIV InfectionsHIV SeropositivityHost-Pathogen InteractionsHumansLeukocytes, MononuclearMembrane GlycoproteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusNeoplasm ProteinsProtein TransportReceptors, Cell SurfaceHAVCR1 protein, humanHepatitis A Virus Cellular Receptor 1Membrane GlycoproteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusNeoplasm ProteinsReceptors, Cell SurfaceSERINC3 protein, humanSERINC5 protein, humanHIVNefSERINCTIM

Identifiers

PMID30842281
PMCPMC6431140
OpenAlexW2919901342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.