Evidence map›Paper›PMID 30840746›Full record

ArticleJournal of medical imaging (Bellingham, Wash.)2018

Malaria parasite detection and cell counting for human and mouse using thin blood smear microscopy.

Mahdieh Poostchi, Ilker Ersoy, Katie McMenamin, Emile Gordon, Nila Palaniappan, Susan Pierce, Richard J Maude, Abhisheka Bansal, Prakash Srinivasan, Louis Miller and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical imaging (Bellingham, Wash.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  3. Article
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  5. Article
  6. Deep Learning-Based Cell Detection and Extraction in Thin Blood Smears for Malaria Diagnosis.IEEE Applied Imagery Pattern Recognition Workshop : [proceedings]. IEEE Applied Imagery Pattern Recognition Workshop · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Image analysis and artificial intelligence in infectious disease diagnostics.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 5 countries.

Mahdieh PoostchiLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, Maryland, United States.ORCID https://orcid.org/0000-0003-4670-6087
Ilker ErsoyUniversity of Missouri-Columbia, Informatics Institute, Missouri, United States.ORCID https://orcid.org/0000-0003-2650-4496
Katie McMenaminUniversity of Colorado Boulder, Aerospace Engineering Sciences Department, Boulder, Colorado, United States.ORCID https://orcid.org/0000-0002-5483-9122
Emile GordonNational Institute of Allergy and Infectious Diseases, Division of Intramural Research, Rockville, Maryland, United States.
Nila PalaniappanUniversity of Missouri-Kansas City, School of Medicine, Kansas City, Missouri, United States.
Susan PierceNational Institute of Allergy and Infectious Diseases, Division of Intramural Research, Rockville, Maryland, United States.
Richard J MaudeUniversity of Oxford, Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, Oxford, United Kingdom.ORCID https://orcid.org/0000-0002-5355-0562
Abhisheka BansalJawaharlal Nehru University, School of Life Sciences, New Delhi, India.
Prakash SrinivasanNational Institute of Allergy and Infectious Diseases, Laboratory of Malaria and Vector Research, Rockville, Maryland, United States.
Louis MillerNational Institute of Allergy and Infectious Diseases, Laboratory of Malaria and Vector Research, Rockville, Maryland, United States.
Kannappan PalaniappanUniversity of Missouri-Columbia, Department of Electrical Engineering and Computer Science, Columbia, Missouri, United States.
George ThomaLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, Maryland, United States.
Stefan JaegerLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, Maryland, United States.
National Institute of Allergy and Infectious Diseases · USNational Center for Biotechnology Information · USUniversity of Missouri · USHarvard University Press · USUniversity of Colorado Boulder · USUniversity of Missouri–Kansas City · USVector (United States) · US

Funding

Malaria Parasite Receptors And Host Cell LigandsZIAAI000241 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MILLER, LOUIS · 2009 to 2025
$15.3M
MalariaScreener: image analysis and machine learning for detecting malaria in blood filmZIALM010006 · NLM · NATIONAL LIBRARY OF MEDICINE · PI JAEGER, STEFAN · 2017 to 2020
$2.6M
Quantifying deformable motion in growth and motilityR33EB000573 · NIBIB · UNIVERSITY OF MISSOURI-COLUMBIA · PI PALANIAPPAN, K. · 2003 to 2005
$605k
NIBIB NIH HHS R33 EB000573Wellcome Trust
6 · The paper itself

Abstract

Despite the remarkable progress that has been made to reduce global malaria mortality by 29% in the past 5 years, malaria is still a serious global health problem. Inadequate diagnostics is one of the major obstacles in fighting the disease. An automated system for malaria diagnosis can help to make malaria screening faster and more reliable. We present an automated system to detect and segment red blood cells (RBCs) and identify infected cells in Wright-Giemsa stained thin blood smears. Specifically, using image analysis and machine learning techniques, we process digital images of thin blood smears to determine the parasitemia in each smear. We use a cell extraction method to segment RBCs, in particular overlapping cells. We show that a combination of RGB color and texture features outperforms other features. We evaluate our method on microscopic blood smear images from human and mouse and show that it outperforms other techniques. For human cells, we measure an absolute error of 1.18% between the true and the automatic parasite counts. For mouse cells, our automatic counts correlate well with expert and flow cytometry counts. This makes our system the first one to work for both human and mouse.

Indexed as

Automated malaria diagnosiscell segmentation and classificationcomputational microscopy imagingred blood cell infectionthin blood smears

Identifiers

PMID30840746
PMCPMC6290955
OpenAlexW2903618910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.