Evidence map›Paper›PMID 30840742›Full record

ArticleJournal of medical imaging (Bellingham, Wash.)2018

Recurrence analysis on prostate cancer patients with Gleason score 7 using integrated histopathology whole-slide images and genomic data through deep neural networks.

Jian Ren, Kubra Karagoz, Michael L Gatza, Eric A Singer, Evita Sadimin, David J Foran, Xin Qi

Abstract read
In one paragraph

Article in Journal of medical imaging (Bellingham, Wash.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
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  5. Article
  6. Review
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  9. Article
  10. Integrating pathomics with radiomics and genomics for cancer prognosis: A brief review.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2021
    Article
  11. AI in Medical Imaging Informatics: Current Challenges and Future Directions.IEEE journal of biomedical and health informatics · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jian RenRutgers, the State University of New Jersey, Department of Electrical and Computer Engineering, Piscataway, New Jersey, United States.ORCID https://orcid.org/0000-0002-0511-7473
Kubra KaragozRutgers Cancer Institute of New Jersey, Department of Radiation Oncology, New Brunswick, New Jersey, United States.ORCID https://orcid.org/0000-0003-1967-8682
Michael L GatzaRutgers Cancer Institute of New Jersey, Department of Radiation Oncology, New Brunswick, New Jersey, United States.
Eric A SingerRutgers Cancer Institute of New Jersey, Section of Urologic Oncology, New Brunswick, New Jersey, United States.
Evita SadiminRutgers Cancer Institute of New Jersey, Department of Pathology and Laboratory Medicine, New Brunswick, New Jersey, United States.ORCID https://orcid.org/0000-0003-4275-1358
David J ForanRutgers Cancer Institute of New Jersey, Department of Pathology and Laboratory Medicine, New Brunswick, New Jersey, United States.
Xin QiRutgers Cancer Institute of New Jersey, Department of Pathology and Laboratory Medicine, New Brunswick, New Jersey, United States.ORCID https://orcid.org/0000-0002-6780-1131

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Image Mining for Comparative Analysis of Expression Patterns in Tissue MicroarrayR01LM009239 · NLM · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI FORAN, DAVID J, SALTZ, JOEL H. · 2007 to 2016
$4.5M
Mechano-Visual Phenotyping of Cancer: From Onset Through Disease ProgressionR01CA161375 · NCI · UNIV OF MARYLAND, COLLEGE PARK · PI DESAI, JAYDEV P., FORAN, DAVID J · 2012 to 2016
$1.6M
Methods and Tools for Integrating Pathomics Data into Cancer RegistriesUG3CA225021 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI DURBIN, ERIC B., FORAN, DAVID J · 2018 to 2019
$815k
A Pathway-based approach to investigate oncogenic mechanisms in ovarian cancerR00CA166228 · NCI · RBHS -CANCER INSTITUTE OF NEW JERSEY · PI GATZA, MICHAEL L · 2015 to 2017
$747k
NCI NIH HHS P30 CA072720NCI NIH HHS R00 CA166228NCI NIH HHS R01 CA161375NCI NIH HHS UG3 CA225021NLM NIH HHS R01 LM009239
6 · The paper itself

Abstract

Prostate cancer is the most common nonskin-related cancer, affecting one in seven men in the United States. Gleason score, a sum of the primary and secondary Gleason patterns, is one of the best predictors of prostate cancer outcomes. Recently, significant progress has been made in molecular subtyping prostate cancer through the use of genomic sequencing. It has been established that prostate cancer patients presented with a Gleason score 7 show heterogeneity in both disease recurrence and survival. We built a unified system using publicly available whole-slide images and genomic data of histopathology specimens through deep neural networks to identify a set of computational biomarkers. Using a survival model, the experimental results on the public prostate dataset showed that the computational biomarkers extracted by our approach had hazard ratio as 5.73 and

Indexed as

deep neural networksgenomic dataGleason scoreprostate cancerwhole-slide images

Identifiers

PMID30840742
PMCPMC6237203

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.