Evidence map›Paper›PMID 30840709›Full record

SynthesisPloS one2019

Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. aestivum L.).

Claire Guérin, Jane Roche, Vincent Allard, Catherine Ravel, Said Mouzeyar, Mohamed Fouad Bouzidi

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 2 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 2 syntheses or guidelines pooled it, 114 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  11. Identification ofPlants (Basel, Switzerland) · 2024
    Article
  12. Article
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  14. Wheat Omics: Advancements and Opportunities.Plants (Basel, Switzerland) · 2023
    Review
  15. Genome and Transcriptome-Wide Analysis ofInternational journal of molecular sciences · 2022
    Article
  16. Article
  17. Insights into FourInternational journal of molecular sciences · 2022
    Article
  18. Article
  19. Article
  20. Genome-Wide Identification and Characterization of NAC Family inInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Claire GuérinUMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Jane RocheUMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.ORCID 0000-0001-9270-3915
Vincent AllardUMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Catherine RavelUMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Said MouzeyarUMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Mohamed Fouad BouzidiUMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Université Clermont Auvergne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The NAC family is one of the largest plant-specific transcription factor families, and some of its members are known to play major roles in plant development and response to biotic and abiotic stresses. Here, we inventoried 488 NAC members in bread wheat (Triticum aestivum). Using the recent release of the wheat genome (IWGS RefSeq v1.0), we studied duplication events focusing on genomic regions from 4B-4D-5A chromosomes as an example of the family expansion and neofunctionalization of TaNAC members. Differentially expressed TaNAC genes in organs and in response to abiotic stresses were identified using publicly available RNAseq data. Expression profiling of 23 selected candidate TaNAC genes was studied in leaf and grain from two bread wheat genotypes at two developmental stages in field drought conditions and revealed insights into their specific and/or overlapping expression patterns. This study showed that, of the 23 TaNAC genes, seven have a leaf-specific expression and five have a grain-specific expression. In addition, the grain-specific genes profiles in response to drought depend on the genotype. These genes may be considered as potential candidates for further functional validation and could present an interest for crop improvement programs in response to climate change. Globally, the present study provides new insights into evolution, divergence and functional analysis of NAC gene family in bread wheat.

Indexed as

Chromosomes, PlantDatabases, GeneticDroughtsEvolution, MolecularGene DuplicationGene Expression Regulation, PlantGenes, PlantGenome, PlantHeat-Shock ResponseMultigene FamilyPhylogenyPlant ProteinsStress, PhysiologicalTranscription FactorsTriticumPlant ProteinsTranscription Factors

Identifiers

PMID30840709
PMCPMC6402696
OpenAlexW2920176998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.