Evidence map›Paper›PMID 30840646›Full record

ArticlePloS one2019

Targeted next generation sequencing can serve as an alternative to conventional tests in myeloid neoplasms.

Borahm Kim, Hyeonah Lee, Jieun Jang, Soo-Jeong Kim, Seung-Tae Lee, June-Won Cheong, Chuhl Joo Lyu, Yoo Hong Min, Jong Rak Choi

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Borahm KimDepartment of Laboratory Medicine, Yonsei University College of Medicine, Seoul, Korea.
Hyeonah LeeBrain Korea 21 PLUS Project for Medical Science, Yonsei University, Seoul, Korea.
Jieun JangDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, Korea.
Soo-Jeong KimDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, Korea.
Seung-Tae LeeDepartment of Laboratory Medicine, Yonsei University College of Medicine, Seoul, Korea.ORCID 0000-0003-1047-1415
June-Won CheongDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, Korea.
Chuhl Joo LyuDepartment of Pediatrics, Yonsei University College of Medicine, Seoul, Korea.
Yoo Hong MinDepartment of Internal Medicine, Yonsei University College of Medicine, Seoul, Korea.
Jong Rak ChoiDepartment of Laboratory Medicine, Yonsei University College of Medicine, Seoul, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 2016 World Health Organization classification introduced a number of genes with somatic mutations and a category for germline predisposition syndromes in myeloid neoplasms. We have designed a comprehensive next-generation sequencing assay to detect somatic mutations, translocations, and germline mutations in a single assay and have evaluated its clinical utility in patients with myeloid neoplasms. Extensive and specified bioinformatics analyses were undertaken to detect single nucleotide variations, FLT3 internal tandem duplication, genic copy number variations, and chromosomal copy number variations. This enabled us to maximize the clinical utility of the assay, and we concluded that, as a single assay, it can be a good supplement for many conventional tests, including Sanger sequencing, RT-PCR, and cytogenetics. Of note, we found that 8.4-11.6% of patients with acute myeloid leukemia and 12.9% of patients with myeloproliferative neoplasms had germline mutations, and most were heterozygous carriers for autosomal recessive marrow failure syndromes. These patients often did not respond to standard chemotherapy, suggesting that germline predisposition may have distinct and significant clinical implications.

Indexed as

AdolescentAdultAgedAged, 80 and overChildChild, PreschoolComputational BiologyCytogeneticsDNA Copy Number VariationsFemaleGenetic Predisposition to DiseaseHigh-Throughput Nucleotide SequencingHumansInfantLeukemia, Myeloid, AcuteMale

Identifiers

PMID30840646
PMCPMC6402635

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.