Evidence map›Paper›PMID 30840202›Full record

ArticlePlant molecular biology2019

Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.

Shanwen Ke, Xin Luan, Jiayan Liang, Yu-Hung Hung, Tzung-Fu Hsieh, Xiang-Qian Zhang

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 51 citations in OpenAlex.

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  13. COG2 negatively regulates chilling tolerance through cell wall components altered in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Shanwen KeGuangdong Engineering Research Center of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510642, China.
Xin LuanGuangdong Engineering Research Center of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510642, China.
Jiayan LiangGuangdong Engineering Research Center of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510642, China.
Yu-Hung HungPlants for Human Health Institute, North Carolina State University, North Carolina Research Campus, Kannapolis, NC, 28081, USA.
Tzung-Fu HsiehPlants for Human Health Institute, North Carolina State University, North Carolina Research Campus, Kannapolis, NC, 28081, USA. thsieh3@ncsu.edu.
Xiang-Qian ZhangGuangdong Engineering Research Center of Grassland Science, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510642, China. aacrav@163.com.ORCID http://orcid.org/0000-0003-1678-2732
South China Agricultural University · CNNorth Carolina State University · US

Funding

Institute of Food and Agricultural Sciences 02413National Natural Science Foundation of China 30900884National Natural Science Foundation of China 31671594Natural Science Foundation of Guangdong Province 2014A030313457Natural Science Foundation of Guangdong Province 2015A020209118
6 · The paper itself

Abstract

key messageRice leucine-rich repeat extensin-like protein OsPEX1 mediates the intersection of lignin deposition and plant growth. Lignin, a major structural component of secondary cell wall, is essential for normal plant growth and development. However, the molecular and genetic regulation of lignin biosynthesis is not fully understood in rice. Here we report the identification and characterization of a rice semi-dominant dwarf mutant (pex1) with stiff culm. Molecular and genetic analyses revealed that the pex1 phenotype was caused by ectopic expression of a leucine-rich repeat extension-like gene, OsPEX1. Interestingly, the pex1 mutant showed significantly higher lignin content and increased expression levels of lignin-related genes compared with wild type plants. Conversely, OsPEX1-suppresssed transgenics displayed low lignin content and reduced transcriptional abundance of genes associated with lignin biosynthesis, indicating that the OsPEX1 mediates lignin biosynthesis and/or deposition in rice. When OsPEX1 was ectopically expressed in rice cultivars with tall stature that lacks the allele of semi-dwarf 1, well-known green revolution gene, the resulting transgenic plants displayed reduced height and enhanced lodging resistance. Our study uncovers a causative effect between the expression of OsPEX1 and lignin deposition. Lastly, we demonstrated that modulating OsPEX1 expression could provide a tool for improving rice lodging resistance.

Indexed as

Plant DevelopmentBase SequenceGene Expression Regulation, PlantGenes, PlantGlycoproteinsLigninMutationOryzaPhenotypePlant ProteinsPlants, Genetically ModifiedPlant Stemsextensin protein, plantGlycoproteinsLigninPlant ProteinsLeucine-rich repeat extensin-like proteinLigninLodging resistanceOsPEX1RiceSemi-dwarf

Identifiers

PMID30840202
OpenAlexW2919892225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.