Evidence map›Paper›PMID 30840191›Full record

ArticlePathology oncology research : POR2020

Relative and Absolute Expression Analysis of MicroRNAs Associated with Luminal A Breast Cancer- A Comparison.

Vahid Arabkari, Eoin Clancy, Róisín M Dwyer, Michael J Kerin, Olga Kalinina, Emma Holian, John Newell, Terry J Smith

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Pathology oncology research : POR, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 32 citations in OpenAlex.

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  5. MicroRNAs as Endocrine Modulators of Breast Cancer.International journal of molecular sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Vahid ArabkariMolecular Diagnostics Research Group, School of Natural Sciences and National Centre for Biomedical Engineering Science (NCBES), NUI Galway, Galway, Ireland. v.arabkari1@nuigalway.ie.
Eoin ClancyMolecular Diagnostics Research Group, School of Natural Sciences and National Centre for Biomedical Engineering Science (NCBES), NUI Galway, Galway, Ireland.
Róisín M DwyerDiscipline of Surgery, School of Medicine, Lambe Institute for Translational Research, NUI Galway, Galway, Ireland.
Michael J KerinDiscipline of Surgery, School of Medicine, Lambe Institute for Translational Research, NUI Galway, Galway, Ireland.
Olga KalininaClinical Research Facility and School of Mathematics, Statistics and Applied Mathematics, NUI Galway, Galway, Ireland.
Emma HolianClinical Research Facility and School of Mathematics, Statistics and Applied Mathematics, NUI Galway, Galway, Ireland.
John NewellClinical Research Facility and School of Mathematics, Statistics and Applied Mathematics, NUI Galway, Galway, Ireland.
Terry J SmithMolecular Diagnostics Research Group, School of Natural Sciences and National Centre for Biomedical Engineering Science (NCBES), NUI Galway, Galway, Ireland. terry.smith@nuigalway.ie.
Ollscoil na Gaillimhe – University of Galway · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs, as small non-coding regulatory RNAs, play crucial roles in various aspects of breast cancer biology. They have prognostic and diagnostic value, which makes them very interesting molecules to investigate. Reverse transcriptase quantitative polymerase chain reaction (RT-qPCR) is the gold standard method to analyse miRNA expression in breast cancer patients. This study investigated two RT-qPCR methods (absolute and relative) to determine the expression of ten miRNAs in whole blood samples obtained from luminal A breast cancer patients compared to healthy controls. Whole blood samples were collected from 38 luminal A breast cancer patients and 20 healthy controls in Paxgene blood RNA tubes. Total RNA was extracted and analysed by relative and absolute RT-qPCR. For relative RT-qPCR, miR-16 was used as an endogenous control. For absolute RT-qPCR, standard curves were generated using synthetic miRNA oligonucleotides to determine the absolute copy number of each miRNA. Of the ten miRNAs that were analysed, the absolute RT-qPCR method identified six miRNAs (miR-16, miR-145, miR-155, miR-451a, miR-21 and miR-486) that were upregulated and one miRNA (miR-195) that was downregulated. ROC curve and AUC analysis of the data found that the combination of three miRNAs (miR-145, miR-195 and miR-486) had the best diagnostic value for luminal A breast cancer with an AUC of 0.875, with 76% sensitivity and 81% specificity. On the other hand, the relative RT-qPCR method identified two miRNAs (miR-155 and miR-486) that were upregulated and miR-195, which was downregulated. Using this approach, the combination of three miRNAs (miR-155, miR-195 and miR-486) was showed to have an AUC of 0.657 with 65% sensitivity and 69% specificity. We conclude that miR-16 is not a suitable normalizer for the relative expression profiling of miRNAs in luminal A breast cancer patients. Compared to relative quantification, absolute quantification assay is a better method to determine the expression level of circulating miRNAs in Luminal A breast cancer.

Indexed as

AdultBiomarkers, TumorBreast NeoplasmsFemaleHumansMicroRNAsMiddle AgedSensitivity and SpecificityBiomarkers, TumorMicroRNAsAbsolute quantificationLuminal A breast cancerMicroRNAsRelative quantification

Identifiers

PMID30840191
OpenAlexW2921582728

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.