Evidence map›Paper›PMID 30839525›Full record

ArticleLight, science & applications2018

Spectroscopic stimulated Raman scattering imaging of highly dynamic specimens through matrix completion.

Haonan Lin, Chien-Sheng Liao, Pu Wang, Nan Kong, Ji-Xin Cheng

Abstract read
In one paragraph

Article in Light, science & applications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  20. Design rules for dense and rapid Lissajous scanning.Microsystems & nanoengineering · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Haonan LinDepartment of Biomedical Engineering, Boston University, Boston, MA 02215, USA.
Chien-Sheng LiaoDepartment of Electrical & Computer Engineering, Boston University, Boston, MA 02215, USA.
Pu WangVibronix, Inc., West Lafayette, IN 47907, USA.
Nan KongWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN 47907, USA.
Ji-Xin ChengDepartment of Biomedical Engineering, Boston University, Boston, MA 02215, USA.

Funding

High-throughput high-content single cell analysis by multichannel stimulatedRaman flow cytometryR01GM118471 · NIGMS · PURDUE UNIVERSITY · PI CHENG, JI-XIN · 2016 to 2019
$1.6M
NIGMS NIH HHS R01 GM118471
6 · The paper itself

Abstract

Spectroscopic stimulated Raman scattering (SRS) imaging generates chemical maps of intrinsic molecules, with no need for prior knowledge. Despite great advances in instrumentation, the acquisition speed for a spectroscopic SRS image stack is fundamentally bounded by the pixel integration time. In this work, we report three-dimensional sparsely sampled spectroscopic SRS imaging that measures ~20% of pixels throughout the stack. In conjunction with related work in low-rank matrix completion (e.g., the Netflix Prize), we develop a regularized non-negative matrix factorization algorithm to decompose the sub-sampled image stack into spectral signatures and concentration maps. This design enables an acquisition speed of 0.8 s per image stack, with 50 frames in the spectral domain and 40,000 pixels in the spatial domain, which is faster than the conventional raster laser-scanning scheme by one order of magnitude. Such speed allows real-time metabolic imaging of living fungi suspended in a growth medium while effectively maintaining the spatial and spectral resolutions. This work is expected to promote broad application of matrix completion in spectroscopic laser-scanning imaging.

Indexed as

optical microscopyRaman scatteringvibrational spectroscopy

Identifiers

PMID30839525
PMCPMC6060072

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.