Evidence map›Paper›PMID 30838853›Full record

ReviewChemical reviews2019

Protein-Catalyzed Capture Agents.

Heather D Agnew, Matthew B Coppock, Matthew N Idso, Bert T Lai, JingXin Liang, Amy M McCarthy-Torrens, Carmen M Warren, James R Heath

Open access · greenAbstract readReview
In one paragraph

Review in Chemical reviews, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Protein Catalyzed Capture (PCC) Agents for Antigen Targeting.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  6. In Silico Analysis of Peptide Macrocycle -Protein Interactions.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. SuFEx-enabled, agnostic discovery of covalent inhibitors of human neutrophil elastase.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Heather D AgnewIndi Molecular, Inc. , 6162 Bristol Parkway , Culver City , California 90230 , United States.
Matthew B CoppockSensors and Electron Devices Directorate , U.S. Army Research Laboratory , Adelphi , Maryland 20783 , United States.
Matthew N IdsoInstitute for Systems Biology , 401 Terry Avenue North , Seattle , Washington 98109-5234 , United States.ORCID 0000-0001-5685-0870
Bert T LaiIndi Molecular, Inc. , 6162 Bristol Parkway , Culver City , California 90230 , United States.
JingXin LiangInstitute for Systems Biology , 401 Terry Avenue North , Seattle , Washington 98109-5234 , United States.ORCID 0000-0001-6600-8409
Amy M McCarthy-TorrensInstitute for Systems Biology , 401 Terry Avenue North , Seattle , Washington 98109-5234 , United States.ORCID 0000-0003-3456-0383
Carmen M WarrenIndi Molecular, Inc. , 6162 Bristol Parkway , Culver City , California 90230 , United States.
James R HeathInstitute for Systems Biology , 401 Terry Avenue North , Seattle , Washington 98109-5234 , United States.ORCID 0000-0001-5356-4385
North Seattle College · USDEVCOM Army Research Laboratory · US

Funding

Repurposing of cancer therapeutics for treatment of patients with COVID-19 diseaseU54CA199090 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI HEATH, JAMES R., RIBAS, ANTONI · 2015 to 2020
$11.4M
NCI NIH HHS U54 CA199090US Army Research Office W911NF-09-D-0001
6 · The paper itself

Abstract

Protein-catalyzed capture agents (PCCs) are synthetic and modular peptide-based affinity agents that are developed through the use of single-generation in situ click chemistry screens against large peptide libraries. In such screens, the target protein, or a synthetic epitope fragment of that protein, provides a template for selectively promoting the noncopper catalyzed azide-alkyne dipolar cycloaddition click reaction between either a library peptide and a known ligand or a library peptide and the synthetic epitope. The development of epitope-targeted PCCs was motivated by the desire to fully generalize pioneering work from the Sharpless and Finn groups in which in situ click screens were used to develop potent, divalent enzymatic inhibitors. In fact, a large degree of generality has now been achieved. Various PCCs have demonstrated utility for selective protein detection, as allosteric or direct inhibitors, as modulators of protein folding, and as tools for in vivo tumor imaging. We provide a historical context for PCCs and place them within the broader scope of biological and synthetic aptamers. The development of PCCs is presented as (i) Generation I PCCs, which are branched ligands engineered through an iterative, nonepitope-targeted process, and (ii) Generation II PCCs, which are typically developed from macrocyclic peptide libraries and are precisely epitope-targeted. We provide statistical comparisons of Generation II PCCs relative to monoclonal antibodies in which the protein target is the same. Finally, we discuss current challenges and future opportunities of PCCs.

Indexed as

Amino Acid SequenceAnimalsAptamers, PeptideClick ChemistryEnzyme InhibitorsHumansLigandsPeptide LibraryPeptoidsProtein BindingProteinsAptamers, PeptideEnzyme InhibitorsLigandsPeptide LibraryPeptoidsProteins

Identifiers

PMID30838853
PMCPMC6731165
OpenAlexW2922105798

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.