Evidence map›Paper›PMID 30837613›Full record

ArticleScientific reports2019

New Statistical Methods for Constructing Robust Differential Correlation Networks to characterize the interactions among microRNAs.

Danyang Yu, Zeyu Zhang, Kimberly Glass, Jessica Su, Dawn L DeMeo, Kelan Tantisira, Scott T Weiss, Weiliang Qiu

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Danyang YuDepartment of Information and Computing Science, College of Mathematics and Econometrics, Hunan University, Hunan, China.
Zeyu ZhangBioinformatics Department, School of Life Sciences and Technology, Tongji University, Shanghai, China.
Kimberly GlassChanning Division of Network Medicine, Brigham and Women's Hospital/Harvard Medical School, Boston, USA.
Jessica SuChanning Division of Network Medicine, Brigham and Women's Hospital/Harvard Medical School, Boston, USA.
Dawn L DeMeoChanning Division of Network Medicine, Brigham and Women's Hospital/Harvard Medical School, Boston, USA.
Kelan TantisiraChanning Division of Network Medicine, Brigham and Women's Hospital/Harvard Medical School, Boston, USA.
Scott T WeissChanning Division of Network Medicine, Brigham and Women's Hospital/Harvard Medical School, Boston, USA.
Weiliang QiuChanning Division of Network Medicine, Brigham and Women's Hospital/Harvard Medical School, Boston, USA. stwxq@channing.harvard.edu.ORCID 0000-0002-9155-6957

Funding

Systems Biology of Airway DiseaseP01HL132825 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LANGE, CHRISTOPH · 2016 to 2020
$12.6M
INTEGRATIVE PHARMACOGENOMICS OF LEUKOTRIENE INHIBITION IN ASTHMAR01HL092197 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2009 to 2013
$3.6M
MICRORNAS IN CIRCULATION: ONTOLOGIES OF ASTHMA SEVERITY AND TREATMENT (MICROCOAST)R01HL127332 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2015 to 2018
$3.4M
DISEASE AND HEALTH: ASTHMA RESILIENCE THROUGH MICRORNA ATTRIBUTES (DHARMA)R01HL129935 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2015 to 2017
$1.4M
Using Integrative Networks to Explore Heterogeneous Phenotypes in COPDK25HL133599 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI GLASS, KIMBERLY RENEE · 2016 to 2020
$945k
NHLBI NIH HHS K25 HL133599NHLBI NIH HHS P01 HL132825NHLBI NIH HHS R01 HL092197NHLBI NIH HHS R01 HL127332NHLBI NIH HHS R01 HL129935
6 · The paper itself

Abstract

The interplay among microRNAs (miRNAs) plays an important role in the developments of complex human diseases. Co-expression networks can characterize the interactions among miRNAs. Differential correlation network is a powerful tool to investigate the differences of co-expression networks between cases and controls. To construct a differential correlation network, the Fisher's Z-transformation test is usually used. However, the Fisher's Z-transformation test requires the normality assumption, the violation of which would result in inflated Type I error rate. Several bootstrapping-based improvements for Fisher's Z test have been proposed. However, these methods are too computationally intensive to be used to construct differential correlation networks for high-throughput genomic data. In this article, we proposed six novel robust equal-correlation tests that are computationally efficient. The systematic simulation studies and a real microRNA data analysis showed that one of the six proposed tests (ST5) overall performed better than other methods.

Indexed as

AlgorithmsGene Regulatory NetworksDatabases, GeneticHumansLogistic ModelsMicroRNAsNeoplasmsMicroRNAs

Identifiers

PMID30837613
PMCPMC6401044

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.