Evidence map›Paper›PMID 30837550›Full record

ArticleScientific reports2019

Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures.

Jiawei Chen, Helu Liu, Shanya Cai, Haibin Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jiawei ChenInstitute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000, China.
Helu LiuInstitute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000, China.
Shanya CaiInstitute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000, China.
Haibin ZhangInstitute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000, China. hzhang@idsse.ac.cn.ORCID 0000-0001-5429-9851

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrostatic pressure is an important environmental factor affecting the vertical distribution of marine organisms. Laboratory-based studies have shown that many extant shallow-water marine benthic invertebrates can tolerate hydrostatic pressure outside their known natural distributions. However, only a few studies have focused on the molecular mechanisms of pressure acclimatisation. In the present work, we examined the pressure tolerance of the shallow-water amphipod Eogammarus possjeticus at various temperatures (5, 10, 15, and 20 °C) and hydrostatic pressures (0.1-30 MPa) for 16 h. Six of these experimental groups were used for transcriptome analysis. We found that 100% of E. possjeticus survived under 20 MPa at all temperature conditions for 16 h. Sequence assembly resulted in 138, 304 unigenes. Results of differential expression analysis revealed that 94 well-annotated genes were up-regulated under high pressure. All these findings indicated that the pressure tolerance of E. possjeticus was related to temperature. Several biological processes including energy metabolism, antioxidation, immunity, lipid metabolism, membrane-related process, genetic information processing, and DNA repair are probably involved in the acclimatisation in deep-sea environments.

Indexed as

Gene Expression ProfilingHydrostatic PressureTemperatureTranscriptomeAmphipodaAnimalsComputational BiologyHigh-Throughput Nucleotide SequencingMolecular Sequence Annotation

Identifiers

PMID30837550
PMCPMC6401005

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